FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12913174
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG496120.3841967900378327No Hit
GGGGGT336480.2605711035877004No Hit
GTGGGG314470.2435264947254641No Hit
GGGTGG301480.23346700044466215No Hit
TGGGGG301180.233234679560579No Hit
GGTGGG275500.21334801188305835No Hit
GGGGTG275260.2131621551757918No Hit
GGAGGG228550.17698979352403987No Hit
GGCGGG226410.1753325712175798No Hit
GGGGGC217360.16832422454773704No Hit
AGGGGG214970.166473401504541No Hit
GGGGCG211670.16391787177962597No Hit
CGGGGG211630.16388689566174822No Hit
GTGTGG209600.16231485767945203No Hit
GGGTGT209320.1620980248543077No Hit
GGTTGG208940.161803751734469No Hit
GAGGGG208030.16109904505275002No Hit
GGGCGG206290.15975158392506753No Hit
TGGTGG201060.15570145651255068No Hit
GTTGGG199350.1543772274732765No Hit
GTGGGT195160.15113247912558136No Hit
GCGGGG194930.15095436644778423No Hit
GGGGTT194290.15045874856174013No Hit
TTGGGG194240.15042002841439292No Hit
GGGGGA193360.14973855382108225No Hit
GGTGGT190870.14781029048319183No Hit
TGTGGG184950.14322582503728362No Hit
GTGGTG178800.13846324691357834No Hit
GGGGAG175750.13610131792539928No Hit
GGGAGG172760.13378585311403687No Hit
GGGTTG172220.13336767552268716No Hit
TGGGGT171640.13291852181345964No Hit
GGTGTG167830.1299680465856032No Hit
GGCTGG160940.12463241028115937No Hit
TGCGGG152490.11808870537948299No Hit
TGGGTG150520.11656313157400343No Hit
GGCGGT148190.11475877270762402No Hit
GGGGCT148000.11461163614770466No Hit
AGGGGT147950.11457291600035747No Hit
GTTGGT147490.11421669064476325No Hit
CTGGGG147140.11394564961333287No Hit
GTTTGG146970.11381400111235239No Hit
AGGTGG146750.11364363246402472No Hit
TGAGGG146700.11360491231667752No Hit
TTTGGG146310.1133028951673694No Hit
ATGGGG145140.11239684371944496No Hit
GGATGG142780.11056925276465723No Hit
GTCGGG142300.11019753935012414No Hit
GGGGTA140060.1084628767489697No Hit
TTGGGT138620.10734773650537041No Hit
CGGGGT137830.10673595817728468No Hit
TTGTGG136030.10534203287278557No Hit
GGTTTG135820.10517940825392734No Hit
GGGTTT135410.10486190304568033No Hit
GTAGGG134260.10397133965669478No Hit
GTGGTT133560.10342925759383402No Hit
GGTTGT132400.10253095017537903No Hit
GAGGGT132100.10229862929129585No Hit
GTGTGT131860.1021127725840293No Hit
GTGGCG130390.1009744002520217No Hit
TGGGCG129960.1006414069848358No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)