FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13774735
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG666780.4840601289244403No Hit
TGGGGG369790.26845525521906594No Hit
GGGGGT364860.2648762389984272No Hit
GTGGGG357020.2591846594507989No Hit
GGGTGG347540.2523024943855544No Hit
GGTGGG339780.24666899218024882No Hit
GGGGTG334440.24279232958020605No Hit
CGGGGG317070.2301822866283816No Hit
GGGGCG298930.21701324925670076No Hit
GGCGGG278930.20249391367601627No Hit
GGGGGA259480.18837385982380062No Hit
GGAGGG255810.18570956174474498No Hit
GCGGGG250210.18164414778215335No Hit
GGGGGC248960.18073668930836057No Hit
GGGGAG243900.17706329740644738No Hit
GGGAGG242920.17635184996299386No Hit
GAGGGG241460.17529193846560387No Hit
GGGCGG236260.1715169112146259No Hit
GTGTGG218690.15876167490699458No Hit
TGTGGG216640.15727344300997442No Hit
GCAATT213710.15514636034740414No Hit
TGGTGG208890.1516472004724592No Hit
GGTGGT208710.151516526452233No Hit
GGGGTT205540.14921521176269453No Hit
TTGGGG205160.1489393443866615No Hit
GTTGGG205030.14884496870538708No Hit
GTGGTG204490.1484529466447086No Hit
GGTTGG203070.14742207381848No Hit
GGGTGT197000.14301545546974223No Hit
CCTCCT195270.14175953294201304No Hit
TGGGGT194440.14115698051541464No Hit
GTGGGT193770.1406705827734617No Hit
GGGTTG189390.1374908482812918No Hit
CTGGGG188920.1371496438951457No Hit
CGGGGT184650.13404976574866956No Hit
GGTGTG177460.1288300646074135No Hit
CGGTGG176240.12794438513699175No Hit
TGGGTG174170.1264416339043909No Hit
GTGGCG173390.1258753798167442No Hit
GTCGGG172300.12508407602759689No Hit
GGGGCT167700.12174462884403947No Hit
GGTCGG163080.11839066232490136No Hit
GTAGGG161180.11701132544473633No Hit
CGGGTG159210.1155811708900389No Hit
TCGGGG158620.1151528504904087No Hit
TGCGGG158470.11504395547355357No Hit
GGGTCG158070.11475356876193987No Hit
TGAGGG156260.11343956889188794No Hit
GGGTAG156220.11341053022072657No Hit
GGCGGT155210.112677303773902No Hit
GGTAGG153990.11179162430348025No Hit
GGGCGT152240.11052118244017037No Hit
GGGCCG152090.11041228742331521No Hit
TAGGGG151080.10967906097649066No Hit
TTGTGG150750.10943949193940937No Hit
CGTGGG149810.1087570831671172No Hit
CGCGGG149330.10840861911318075No Hit
TGGCGG147780.1072833706056777No Hit
GCGGGT147650.10718899492440327No Hit
GTGCGG146680.10648480714874006No Hit
GGCTGG145330.10550475199704386No Hit
GGAGGT144920.10520710561763982No Hit
GGGTGC143810.10440128249291185No Hit
GGGGTA142480.10343574667679634No Hit
GGCGTG142430.1033994483378446No Hit
TGTGGT141670.1028477135857786No Hit
TGGGGC141390.10264444288764901No Hit
GTTTGG141370.10262992355206833No Hit
TGGGGA140590.10206366946442164No Hit
GGGGTC140460.1019692937831472No Hit
GGAGTG139780.10147563637340391No Hit
TTTGGG139710.10142481869887153No Hit
GGGGAT139510.10127962534306467No Hit
GTGAGG138720.10070611158762763No Hit
GTGTGT138640.10064803424530488No Hit
GGGGCC138490.10053913922844976No Hit
GCGTGG138250.10036490720148154No Hit
GTGTTG138040.10021245417788437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)