FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19703657
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG819150.4157350079733929No Hit
GGGGGT536220.2721423743825829No Hit
GGGTGG505120.25635850238359303No Hit
GTGGGG491200.24929382398404518No Hit
TGGGGG464080.2355298815849261No Hit
GGTGGG463600.23528627198494168No Hit
GGGGTG444160.2254200831855731No Hit
CGGGGG362400.18392524798822876No Hit
GGGTGT345120.17515530238879007No Hit
AGGGGG342550.17385097598887353No Hit
GGAGGG333580.1692985215891649No Hit
GGGGTT332840.16892295678918892No Hit
GGGGCG325400.1651470079894306No Hit
GTGGGT323030.16394418558950757No Hit
GGTGGT320720.1627718143895826No Hit
GGGGGA319690.16224906878961606No Hit
GGGGGC318840.16181767678964368No Hit
TTGGGG317650.1612137279896823No Hit
GGGTTG312360.15852894718985414No Hit
GGGGAG312140.1584172927898613No Hit
GTGTGG307300.1559608959900185No Hit
GGCGGG301280.15290562559021403No Hit
GAGGGG301240.15288532479021533No Hit
TGGGGT291590.14798775679052878No Hit
GGTTGG290430.14739903359056647No Hit
GGGAGG288970.14665805439061388No Hit
GTTGGG282760.1435063551908156No Hit
GCGGGG281060.14264357119087082No Hit
TGGTGG273530.13882194559111538No Hit
GGGCGG258810.13135125119159352No Hit
GGTGTG258010.1309452351916195No Hit
GTGGTG254380.1291029375917374No Hit
GGGTTT253800.12880857599175624No Hit
TGGGTG249980.12686984959188033No Hit
TGTGGG245590.12464183679202293No Hit
AGGTGG245100.12439315199203885No Hit
GGGGAT242440.12304314879212523No Hit
AGGGGT240240.1219266047921967No Hit
GTTGGT237560.12056645119228374No Hit
GTGTGT237470.12052077439228667No Hit
GGGGCT235680.11961231359234481No Hit
CTGGGG232640.11806945279244356No Hit
CGGGGT231460.11747057919248187No Hit
GTGGTT224040.11370478079272289No Hit
TTGGGT223000.11317695999275668No Hit
GTGGCG221990.11266436479278948No Hit
ATGGGG218870.11108090239289083No Hit
GGAGGT213770.10849255039305648No Hit
CGGTGG213610.10841134719306168No Hit
GTTTGG212670.10793427839309219No Hit
GGGTCG212450.10782262399309936No Hit
GGATGG211990.1075891647931143No Hit
GTCGGG210600.10688371199315944No Hit
CGGGTG207670.10539667839325462No Hit
TGAGGG207450.10528502399326176No Hit
GGGGTA206320.10471152639329846No Hit
GGTTGT206060.10457957119330691No Hit
GGTTTG203530.10329554559338908No Hit
GGGTAG203490.10327524479339038No Hit
GTGTTG202890.10297073279340986No Hit
GGGGTC199360.10117918719352453No Hit
GGGCGT199160.10107768319353103No Hit
GGCGGT199060.10102693119353429No Hit
AGTGGG199050.1010218559935346No Hit
TGGGTT197280.1001235455935921No Hit
GTAGGG197270.10011847039359241No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)