FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9027113
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG450490.49904105554012673No Hit
GGGGGT257090.284797587002622No Hit
TGGGGG249250.27611263977752354No Hit
GTGGGG243830.27010850534384584No Hit
GGGTGG222900.2469227980196991No Hit
CGGGGG220680.24446354000442885No Hit
GGGGCG202470.2242909776359286No Hit
GGTGGG201320.22301703767306338No Hit
GGGGTG201250.22293949350141068No Hit
GGGGGA191910.21259288545518373No Hit
AGGGGG189600.21003392779064578No Hit
GGCGGG185940.20597947538709221No Hit
GGGGAG183460.20323219616282637No Hit
GAGGGG177840.19700650695299815No Hit
GGGGGC177040.19612028784839627No Hit
GCGGGG172960.19160057041492667No Hit
GGGCGG168220.18634972222016055No Hit
GCAATT154220.17084088788962762No Hit
GGAGGG151660.1680049867549016No Hit
GGGAGG151290.16759511041902322No Hit
TGTGGG146280.16204516327645396No Hit
TTGGGG139130.15412458002907464No Hit
TGGTGG137900.15276201815574925No Hit
CTGGGG129920.14392198258734548No Hit
GTGGGT129860.14385551615450032No Hit
GTGGTG125920.13949088706433607No Hit
GTGGCG124100.1374747386013668No Hit
GGGTCG123720.1370537845266809No Hit
GGGGTT122900.13614540994446397No Hit
GGGTGT121040.1340849505262646No Hit
AGGGGT120610.1336086077575411No Hit
TGGGGT120000.13293286569028215No Hit
GTTGGG119870.13278885508578434No Hit
GTGTGG116370.12891164650315112No Hit
GGGTTG112770.12492366053244265No Hit
GGTGGT112520.12464671706225457No Hit
TGCGGG111800.12384911986811288No Hit
TGGGTG110870.12281889015901318No Hit
CGGGGT110290.12217638130817682No Hit
TAGGGG109790.12162249436780065No Hit
TGGCGG108240.11990544485263449No Hit
ATGGGG107390.118963837053995No Hit
GCGGGT106970.11849857202407901No Hit
CGGTGG106520.11800007377774045No Hit
CGTGGG104890.11619440235211412No Hit
GGGCGT104740.11602823627000128No Hit
GCCGGG104670.11595069209834862No Hit
TGAGGG104600.11587314792669595No Hit
GGCGTG104140.11536357194154986No Hit
TCGGGG103810.11499800656090159No Hit
TGGGGC102890.11397885459060943No Hit
GTCGGG102850.11393454363537933No Hit
GGGCTG102070.11307048000839248No Hit
CGGGCG101920.11290431392627963No Hit
GGGTAG100310.11112079797826835No Hit
GGTTGG99900.11066661068715988No Hit
GTGGAG99840.11060014425431475No Hit
GTGCGG98450.109060338560069No Hit
GGCTGG97720.10825166362711976No Hit
GTGGGA97480.1079857978957392No Hit
TGGGCG97450.10795256467931663No Hit
AGGTGG97350.10784178729124139No Hit
GTAGGG96860.10729897808967273No Hit
TGGGGA96840.10727682261205769No Hit
GTGAGG96190.10655676958956867No Hit
AGGGGC96030.1063795257686483No Hit
GGGCCG95700.10601396038800001No Hit
AGTGGG95540.10583671656707964No Hit
AGGGCG95010.1052495964102809No Hit
CGCGGG94140.10428583313402634No Hit
GGCGGT93480.1035547023727298No Hit
GGGGTA92580.1025577058800527No Hit
GAGGGT92560.10253555040243764No Hit
GGCGCG92540.10251339492482259No Hit
GGCCGG92010.10192627476802384No Hit
GGGGAT91710.10159394260379814No Hit
GGTGTG90820.10060802384992854No Hit
GGGGCT90750.10053047967827587No Hit
GGTCGG90480.10023138073047275No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)