FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16891119
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG843160.4991735597860627No Hit
CGGGGG393290.23283833356451988No Hit
GTGGGG380830.2254616760440797No Hit
GGGTGG372900.2207669012337193No Hit
TGGGGG372370.2204531268769109No Hit
GGCGGG372230.2203702430845464No Hit
GGGGGT354350.20978479874542355No Hit
GGGGCG354110.20964271224422726No Hit
GGGCGG346380.20506634285153041No Hit
AGGGGG338140.20018803964379153No Hit
GCGGGG335690.19873757327741282No Hit
GGTGGG331210.19608529192174895No Hit
GGGGTG330320.19555838781314608No Hit
GAGGGG320740.18988676830706125No Hit
GGGGGA313450.18557089083322426No Hit
GGGGGC308860.1828534864978454No Hit
GGAGGG305610.18092939846081246No Hit
GGGAGG296240.17538210464327436No Hit
GGGGAG287540.17023146897490923No Hit
CTGGGG202800.1200630935108562No Hit
GTGGGT201330.119192813691029No Hit
GGCCGG201250.11914545152396357No Hit
GCCGGG198660.11761210136522039No Hit
GGGTGT198260.11737529052989325No Hit
GGCTGG197260.11678326344157543No Hit
GTGTGG197220.11675958235804272No Hit
GTGGCG196710.11645764854300061No Hit
GTCGGG194510.11515518894870137No Hit
CGGGCG193880.11478221188306115No Hit
GGCGGT191070.11311861576488805No Hit
TGGCGG189350.11210032917298136No Hit
AGGGGT188380.11152606289731308No Hit
TGGTGG188250.11144909937583176No Hit
ATGGGG188200.11141949802141587No Hit
TGTGGG187130.1107860290369158No Hit
CGCGGG187080.11075642768249991No Hit
GGGCCG184400.10916979508580811No Hit
GGTTGG184390.10916387481492494No Hit
GGGCGT184290.10910467210609315No Hit
GGGTCG183060.10837647878746222No Hit
GCAGGG182130.10782589359532664No Hit
CGGTGG181540.10747659761321912No Hit
GTAGGG181010.10716282325641066No Hit
GGCAGG180360.10677800564900407No Hit
TTGGGG178490.10567091499384973No Hit
GGGGTT178270.1055406690344198No Hit
GGTGGT178120.10545186497117212No Hit
GGAGGT177330.10498416357140104No Hit
TGCGGG176910.10473551219430755No Hit
TGGGGT175290.10377642831123265No Hit
GGGGCT175250.10375274722769995No Hit
GTGGTG172410.1020713902968773No Hit
CCGGGG172230.10196482542098009No Hit
GTTGGG171790.10170433350212027No Hit
GGGTTG171300.10141424022884452No Hit
CGGGGT169740.1004906779710687No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)