FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13377396
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG384390.28734291785935023No Hit
GGGGGT273550.2044867326944646No Hit
GGGTGG273080.20413539376422735No Hit
GTGGGG267490.19995670308332056No Hit
GGTGGG255700.1911433286418373No Hit
GGGGTG254460.19021639188972203No Hit
TGGGGG242160.18102177733244945No Hit
GGGGTT216740.1620195739140861No Hit
GGGTTG207620.15520210360820597No Hit
GTGTGG201600.15070197518261402No Hit
GGGTGT197430.14758477658880698No Hit
TGGGGT191660.1432715305729157No Hit
GTGGGT186060.13908536459562085No Hit
GGTGGT183520.13718663931306213No Hit
AGGGGG179090.1338750830131664No Hit
CGGGGG178220.13322473222740808No Hit
GGTTGG174690.13058595260243472No Hit
GTGGTT171630.12829851190769861No Hit
TGTGGG171240.12800697534856562No Hit
GGAGGG168390.12587651587797805No Hit
GGGGGA168170.12571205935744148No Hit
GTTGGG166550.12450106134258117No Hit
GGGCGG165850.12397779059541933No Hit
GGTGTG165210.12349937162658563No Hit
TTGGGG165200.1234918963301976No Hit
TGGGTG163630.12231827479727744No Hit
GTGGTG159930.11955241513370765No Hit
TGGTGG159430.1191786503143063No Hit
GAGGGG156890.1172799250317476No Hit
GGGAGG156480.1169734378798385No Hit
GGGGAG156250.1168015060629139No Hit
GCGGGG149940.11208459404206918No Hit
GGGGCG149900.11205469285651708No Hit
GGGTTT149770.11195751400347273No Hit
GTGTGT149400.11168092803711574No Hit
GGGGGC148150.11074651598861243No Hit
CGGGGT147880.1105446829861357No Hit
GGTGTT147270.1100886899064661No Hit
GGTTGT143590.10733778083567234No Hit
GGCGGG139820.10451959409738638No Hit
AGTGGG138350.10342072552834648No Hit
GTGTTG138270.10336092315724227No Hit
GGGCGT137950.10312171367282542No Hit
TGTGGT137740.10296473244867685No Hit
TTGGTG137700.10293483126312475No Hit
TGGGTT135180.10105105657334207No Hit
TTGGGT134810.10077447060698509No Hit
TGGGAG134720.10070719293949286No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)