FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14117727
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG431460.3056157694507055No Hit
GTGGGG286590.20300010051193088No Hit
TGGGGG275160.19490389635668687No Hit
CGGGGG253880.17983064837562024No Hit
GGGTGG251480.17813065800181574No Hit
AGGGGG249260.17655816690604656No Hit
GGGGGT248550.17605525308712938No Hit
GGTGGG216220.1531549660933378No Hit
GGGGTG204440.14481084667524738No Hit
GCGGGG199430.14126211676993045No Hit
GGGGCG195370.13838629972091115No Hit
GAGGGG193290.1369129747302806No Hit
TGTGGG191390.13556714901768535No Hit
TGGTGG188010.13317299590791068No Hit
GTGGGT185840.13163592127826243No Hit
GTTGGG182300.12912843547690078No Hit
GGGTTG182200.12905760254465892No Hit
GTGTGG181410.12849802237994826No Hit
GGGGAG181170.12832802334256782No Hit
GGGCGG180230.1276621937794944No Hit
GGGGGC176980.1253601234816341No Hit
TTGGGG175160.12407096411483237No Hit
GGTTGG174530.1236247166417087No Hit
TGGGTG172760.12237097374102786No Hit
GGCGGG172170.12195305944080091No Hit
ATGGGG166430.11788724913011847No Hit
TGGGGT163290.11566309505772424No Hit
GTGGTG163090.11552142919324052No Hit
GGGTGT158720.11242603005427149No Hit
GGAGGG157400.11149103534867899No Hit
TGGGCG154380.109351880794975No Hit
GGGGGA152900.10830355339779556No Hit
CTGGGG152870.108282303518123No Hit
GGGAGG150620.10668856254268126No Hit
GGGGTT143280.10148942531612916No Hit
GGTGTG141530.1002498490018967No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)