FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4198433
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG362750.8640128352649666No Hit
GGGGGT191660.45650365267231846No Hit
GGGTGG170540.4061991700236732No Hit
GTGGGG158320.37709307258208No Hit
CGGGGG157260.3745683210855098No Hit
GGGGTG148930.35472758526812265No Hit
TGGGGG141390.33676850386799073No Hit
AGGGGG136020.32397801751272437No Hit
GGGCGG135370.32242982084029925No Hit
GGGGGC130860.31168771777470305No Hit
GGTGGG130560.310973165464353No Hit
GGCGGG125890.2998499678332368No Hit
GCGGGG125160.2981112238780516No Hit
GGGAGG118380.2819623416641399No Hit
GGGGGA114910.273697353274424No Hit
GGGGCG110930.26421762595711307No Hit
GGGGAG104990.25006949021218156No Hit
GGAGGG99990.2381602850396803No Hit
GAGGGG90510.21558043203261787No Hit
GGTGGT86990.207196351591177No Hit
GGGGTT84620.20155138833941139No Hit
GGGGCT83110.19795480837731602No Hit
GGCGGT80070.19071401163243523No Hit
CGGGGT76150.18137719477719424No Hit
GGGTGT76030.1810913738530542No Hit
GGGTTG75200.179114445794419No Hit
TGGGTG74910.17842371189441394No Hit
TGGTGG74610.17770915958406386No Hit
GTTGGG74270.1768993336323338No Hit
GTGTGG71040.16920598709089796No Hit
TTGGGG70870.16880107411503292No Hit
GGGGTC70620.16820561385640787No Hit
GGGCGT69800.16625250420811763No Hit
TGGGGT69670.1659428648736326No Hit
TGTGGG69320.16510922051155752No Hit
GTGGGT68260.16258446901498724No Hit
AGGGTG67750.16136973008739214No Hit
CGGGTG66190.15765405807357172No Hit
GCCGGG65380.15572476683562653No Hit
CCGGGG65090.15503403293562146No Hit
TGAGGG65070.15498639611493145No Hit
GGTTGG64290.15312856010802126No Hit
ATGGGG63920.15224727892525616No Hit
GGGTCG63660.1516280002562861No Hit
GGGTAG63590.15146127138387108No Hit
AGGGGT63570.15141363456318108No Hit
GTGGTG62270.14831724121833076No Hit
GTGGCG61710.1469834102390106No Hit
GTTGGT61360.1461497658769355No Hit
GGTGTG61190.14574485290107048No Hit
GAGTGG60890.1450303005907204No Hit
GCGGGT60500.1441013825872653No Hit
GTCGGG60440.14395847212519527No Hit
GTGCGG59200.14100498924241495No Hit
GGGCAG59100.14076680513896495No Hit
GTAGGG59010.14055243944585993No Hit
GGGGAT57410.13674149379065953No Hit
GAGGGT57250.13636039922513946No Hit
GCGCGG57070.13593166783892943No Hit
GGTGGA56910.13555057327340939No Hit
GCGTGG56610.1348360209630593No Hit
CTGGGG56400.13433583434581425No Hit
AGGTGG56160.1337641924975342No Hit
GGAGGC56040.13347837157339418No Hit
GTGTGT55800.1329067297251141No Hit
GGCCGG55600.13243036151821408No Hit
GGGAGT55360.13185871966993398No Hit
CGGTGG55210.13150144351475895No Hit
AGTGGG55120.13128707782165394No Hit
GGGTTT54330.12940542340439873No Hit
TCGGGG54170.1290243288388787No Hit
GGCTGG53530.12749995057679853No Hit
CGTGGG53370.12711885601127848No Hit
TGCGGG52640.1253801120560933No Hit
GGGGAC52520.12509429113195328No Hit
TGGGGC52330.12464174133539822No Hit
GGATGG52290.12454646769401823No Hit
GATGGG51880.12356991286987312No Hit
GGAGGT51540.12276008691814302No Hit
GGAGTG51440.12252190281469301No Hit
GGGCTG50710.12078315885950781No Hit
GGGCCG50600.12052115634571278No Hit
AGGGCG50370.11997333290777773No Hit
GCTGGG50300.11980660403536271No Hit
AGGGGC50100.11933023582846267No Hit
GGGCGA49530.11797258643879752No Hit
GTGGGA49500.11790113120776252No Hit
GGGGTA49070.1168769395629274No Hit
GGCGGC49020.1167578475112024No Hit
CGGGGA48730.11606711361119733No Hit
ACGGGG48580.11570983745602227No Hit
GTGGTT48550.11563838222498728No Hit
GTGAGG48470.11544783494222725No Hit
GGCGGA48380.11523346924912223No Hit
GGTCGG48080.11451891693877216No Hit
GGTTGT47850.1139710935008371No Hit
TGGGCG47540.11323272278014201No Hit
GGGGCA47350.11278017298358697No Hit
GGGTGC47270.11258962570082694No Hit
GTGGAG46950.11182743656978687No Hit
GGTGTT46420.11056506082150173No Hit
GGTAGG46340.11037451353874171No Hit
CGGGGC45980.10951705076632162No Hit
TGGGGA45970.10949323235597663No Hit
GGGATG45870.10925504825252659No Hit
CGGGTT45300.10789739886286145No Hit
GGGTGA45260.10780212522148143No Hit
TTGGGT44900.10694466244906134No Hit
TGGGAG44630.10630156536974628No Hit
CCTGGG44370.10568228670077623No Hit
GGACGG44260.10542028418698118No Hit
GATTGG44240.10537264736629119No Hit
CGGTGT43640.10394354274559103No Hit
GGTGCG43530.10368154023179602No Hit
GCGGGC43330.10320517202489596No Hit
TGGTGT43260.10303844315248095No Hit
CGAGGG43240.10299080633179092No Hit
GGGCGC42980.10237152766282087No Hit
CAGGGG42710.10172843058350581No Hit
GAGGTG42630.10153788330074578No Hit
AGGAGG42550.10134733601798575No Hit
TGGAGG42480.10118060714557073No Hit
GGCTGT42150.10039459960418566No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)