FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13112339
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG724190.5522965811057813No Hit
GGGGGT435480.3321146593296589No Hit
GGGTGG378010.28828571317443824No Hit
GTGGGG357840.2729032554756249No Hit
GGGGTG323380.2466226658721987No Hit
TGGGGG322920.24627185126925105No Hit
GGTGGG319520.24367887376920322No Hit
GGGGGA282250.21525526452603155No Hit
CGGGGG280090.21360796117305997No Hit
GGGAGG269220.20531805957731872No Hit
GGGGGC252510.1925743378050247No Hit
AGGGGG249870.19056096704028166No Hit
GGGCGG246420.1879298575181743No Hit
GGGTGT244770.18667150079020992No Hit
GTGGGT237290.18096695029010462No Hit
GCGGGG236560.1804102227680355No Hit
GGGGAG233870.17835871998123293No Hit
GGGGCG231280.17638348123854944No Hit
GGGGTT230640.17589539135618748No Hit
GGAGGG230380.17569710484147794No Hit
TGGGGT227060.17316513857672533No Hit
GGCGGG218350.16652254033395567No Hit
GGTGGT211660.16142047578239094No Hit
GGGTTG211560.16134421173827188No Hit
GAGGGG209600.15984943647353841No Hit
GTGTGG207570.15830127637792157No Hit
TGGTGG207530.15827077076027396No Hit
TTGGGG203260.15501429607639033No Hit
GGTTGG195760.14929449276746123No Hit
AGGGGT193090.1472582427894825No Hit
GTTGGG186160.14197314453203203No Hit
GTGGTG181440.13837348164961263No Hit
CGGGGT179090.13658127661281486No Hit
TGTGGG172650.13166987217154774No Hit
CTGGGG169210.12904638905385227No Hit
GGGGAT167280.12757449300235452No Hit
ATGGGG166950.12732282165676162No Hit
CGGTGG164170.12520268123025188No Hit
GGGCGT163630.12479085539200901No Hit
GGGTCG163370.12459256887729947No Hit
AGGTGG161420.12310542001697791No Hit
TGGGTG160300.1222512627228445No Hit
GGGGCT157690.12026077117133717No Hit
GGGTAG155730.11876599590660368No Hit
GGGTGC153500.11706530772274878No Hit
GGTGTG153500.11706530772274878No Hit
GGAGGT153290.11690515323009877No Hit
GGGTGA152530.11632554649479394No Hit
GGGTTT150320.11464011111976284No Hit
TGGTGT149590.11408338359769374No Hit
CGTGGG148990.11362579933297942No Hit
GGCGGT148920.11357241450209608No Hit
GAGGGT147410.11242082743589835No Hit
GCGGGT147050.11214627687706977No Hit
AGTGGG146480.11171157182559115No Hit
TTGGGT146280.11155904373735305No Hit
GTGTGT144870.11048372071527437No Hit
GTCGGG144830.11045321509762673No Hit
TGGCGG144520.11021679656085769No Hit
GTGGTT144370.11010240049467909No Hit
TTGTGG143700.10959143139908144No Hit
GGGGTA143210.10921773758289807No Hit
GGGGTC143160.10917960556083854No Hit
GGTTGT142750.1088669229799504No Hit
GTGGGA141630.108012765685817No Hit
GTTGGT138690.10577060278871679No Hit
GTGGCG138520.10564095391371442No Hit
GTGCGG138240.10542741459018107No Hit
GTAGGG138160.10536640335488581No Hit
TGGGGA137990.10523675447988341No Hit
GGTGGA137140.10458851010487144No Hit
TGGGTT137070.1045351252739881No Hit
TGCGGG136990.10447411403869288No Hit
GTTTGG136390.10401652977397853No Hit
GTGGGC136160.10384112247250471No Hit
GCGTGG136020.10373435281073803No Hit
CGGGTG135870.10361995674455947No Hit
TGAGGG134540.10260564495777602No Hit
AGGGTG133750.1020031590092355No Hit
GGTGTT133310.10166759721511166No Hit
GGCTGG131430.10023383318567343No Hit
GAGGTG131350.10017282195037819No Hit
GTGTTG131290.10012706352390675No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)