FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14284508
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG436010.30523277385542436No Hit
TGGGGG306590.2146311234520643No Hit
GGGTGG303990.2128109697582864No Hit
GGGGGT303650.2125729496598693No Hit
GTGGGG266520.18657975479449485No Hit
GGTGGG243170.1702333745061433No Hit
AGGGGG240680.16849022731479446No Hit
GGGGTG228680.16008951795889645No Hit
CGGGGG226600.15863339500387413No Hit
GGGTGT213990.1498056495890513No Hit
GGTGGT209190.1464453658466921No Hit
TGGTGG208900.14624234870392455No Hit
GGGCGG206630.14465321451743385No Hit
GGGGCG202300.14162195855818066No Hit
GTGTGG201130.1408028893959806No Hit
TGGGGT198890.13923475698287963No Hit
GTGGGT189680.13278721255222792No Hit
GGGGTT187960.13158311087788252No Hit
GGGGGA187780.13145710023754406No Hit
GGAGGG184890.1294339294009986No Hit
GGCGGG183640.12855885550975926No Hit
GGTTGG182660.1278727975790276No Hit
TGTGGG182300.12762077629835064No Hit
GGGGGC182210.1275577709781814No Hit
GAGGGG181260.12689271482083947No Hit
GGGAGG177910.12454751679231794No Hit
GGGTTG175960.12318240152198452No Hit
GTGGTG175700.12300038615260672No Hit
GGGGAG171330.11994112782883386No Hit
TTGGGG166920.11685386714054134No Hit
TGGGTG166850.11680486300263195No Hit
GTTGGG165550.115894786155743No Hit
GTGGTT162040.11343757866914284No Hit
GCGGGG161330.11294053669891886No Hit
TGGTGT161210.11285652960535987No Hit
ATGGGG156090.10927222694684338No Hit
GTGTGT152950.10707404133205008No Hit
GGTGTG152150.10651399404165687No Hit
GGGGCT150370.10526788882053201No Hit
AGGGGT150130.10509987463341404No Hit
AGGTGG149730.10481985098821744No Hit
TGGGTT149450.10462383443657981No Hit
GGTTGT148890.10423180133330458No Hit
GGGTTT146830.1027896795605421No Hit
AGTGGG143770.10064749867478809No Hit
GGGTAG143100.10017845906908379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)