FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12018563
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG530910.4417416624599796No Hit
GGGGGT315540.2625438665171535No Hit
GTGGGG295700.2460360693703565No Hit
GGTGGG285550.23759080016471185No Hit
GGGTGG277680.23104259635698546No Hit
TGGGGG266280.22155726936739442No Hit
GGGGTG247780.20616441416498793No Hit
AGGGGG224550.18683598030812834No Hit
GGGGCG219870.1829420039650331No Hit
CGGGGG219160.18235125114375153No Hit
GGCGGG208270.17329026773001066No Hit
GGAGGG204480.17013681252908522No Hit
GCGGGG204310.16999536467046852No Hit
GAGGGG200720.16700831871497449No Hit
GGGGGC196600.16358028825908721No Hit
GGGGGA195770.1628896898905468No Hit
GGGGAG193950.1613753657571209No Hit
GTGGGT191450.1592952501892281No Hit
GGGCGG190290.15833007656572587No Hit
GGTGGT189750.15788077160306102No Hit
GGGGTT185130.1540367180335952No Hit
GTGTGG185070.15398679525996578No Hit
GGGTGT184070.15315474903280865No Hit
TGGTGG180550.15022594631321565No Hit
GGGAGG179860.14965183441647725No Hit
GTTGGG172000.1431119510710224No Hit
TGTGGG166460.138502414972572No Hit
GGTTGG159690.1328694620147184No Hit
GTGGTG156990.1306229372013942No Hit
GGTGTG156170.12994065929512538No Hit
GGGTTG155190.12912525399251143No Hit
TGGGGT148360.12344237826102837No Hit
TGGGTG146930.12225255215619373No Hit
ATGGGG136870.11388216711099321No Hit
TTGGGG136620.11367415555420393No Hit
GGGTAG135800.11299187764793513No Hit
GGAGGT135330.11260081592117127No Hit
CGGGGT133670.11121961918409047No Hit
GTTGGT132340.11011299770197153No Hit
GGGGTA132080.10989666568291068No Hit
GGGGCT130670.10872348050261917No Hit
GGGGAT130590.10865691680444658No Hit
GTGTTG129280.10756693624687079No Hit
GTAGGG127830.10636046921749297No Hit
GTCGGG127340.10595276656618598No Hit
CTGGGG126550.10529545004673187No Hit
GGTCGG125710.10459653121591991No Hit
GGGTGC123290.10258297934619971No Hit
GGGTCG122060.10155956248679647No Hit
GGTTGT121640.10121010307139047No Hit
CGGTGG121350.10096880966551493No Hit
GGCTGG121140.10079407995781194No Hit
GGTAGG121060.10072751625963935No Hit
GTGGCG121010.1006859139482815No Hit
GGCGGT120840.1005444660896648No Hit
AGGGGT120520.1002782112969745No Hit
GGGGTC120420.10019500667425882No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)