FastQCFastQC Report
Wed 8 May 2024
EGAF00005483501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19193190
Total Bases115.1 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG957320.49878107808029826No Hit
GGGGGT550000.28655997257360555No Hit
GGGTGG531610.27697844912700803No Hit
TGGGGG512450.2669957417188075No Hit
GTGGGG482320.2512974654030935No Hit
GGGGTG431190.2246578083163872No Hit
CGGGGG425130.22150043843675804No Hit
AGGGGG411700.21450316492464253No Hit
GGTGGG398740.2077507699345445No Hit
GGGAGG382440.19925817438372673No Hit
GAGGGG381820.19893514314191652No Hit
GGGGGA378410.19715847131196013No Hit
GCGGGG367130.19128138678354145No Hit
GGGCGG361000.18808754563467564No Hit
GGGGCG358800.18694130574438123No Hit
GGAGGG356590.18578985567276726No Hit
GGGGAG355070.1849979081122002No Hit
GGGGGC341870.1781204687704337No Hit
GGCGGG335660.1748849461710117No Hit
GGGTGT302070.15738394711874368No Hit
GGGGTT300510.15657115883289854No Hit
GTGGGT285820.1489174024745235No Hit
TGGGGT281280.1465519801554614No Hit
TTGGGG279660.14570793078169914No Hit
GTGTGG274190.14285796159992165No Hit
TGGTGG273300.14239425546248435No Hit
TGTGGG269740.14053943091273519No Hit
GGGTTG269480.14040396619842768No Hit
ATGGGG262260.13664221528573414No Hit
AGGGGT259620.13526672741738086No Hit
GGTGGT252820.1317238041201072No Hit
GGGGTA252310.13145808487281166No Hit
GTTGGG251980.1312861488892675No Hit
CTGGGG251840.1312132063507942No Hit
GGGGAT243510.12687312531163397No Hit
GGTTGG242320.12625311373461107No Hit
CGGTGG236800.12337709364623599No Hit
CGGGGT234050.12194429378336795No Hit
GTGGTG231690.12071469099196122No Hit
TCGGGG226950.11824506504650868No Hit
GGGAGT226760.11814607160143781No Hit
GGGGCT226510.1180158170684498No Hit
AGGTGG226180.11784388108490562No Hit
GTAGGG223490.11644234230995473No Hit
GTCGGG222300.11582233073293184No Hit
TGGGTG215090.11206579000155785No Hit
GAGGGT214530.1117740198476647No Hit
CAGGGG214530.1117740198476647No Hit
GCGGGT212900.11092476029258293No Hit
GGATGG212620.11077887521563638No Hit
GGGTCG208270.10851244634164513No Hit
GGTGTG207220.10796537730309554No Hit
GGGTAG206880.10778823113823184No Hit
CGGGTG205530.10708485666009664No Hit
AGGGTG202860.10569373824778476No Hit
GGCTGG202140.10531860519277933No Hit
GGGATG199630.10401084968157978No Hit
TGAGGG199280.10382849333539657No Hit
GATGGG198330.10333352611004215No Hit
TGCGGG198270.10330226502212503No Hit
GTGGGA197120.10270309417038022No Hit
AGTGGG196870.10257283963739222No Hit
GGAGGT195720.10197366878564741No Hit
GGTAGG194970.10158290518668339No Hit
GGCGGT194460.10131718593938788No Hit
AAGGGG194170.10116609068112178No Hit
GGGGCA193860.10100457506021668No Hit
GGGTTT193840.10099415469757764No Hit
TGGCGG193280.1007023845436845No Hit
CCGGGG192730.1004158245711109No Hit
TGGGGA192450.10026993949416434No Hit
GGGGTC192030.10005111187874449No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)