FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14831649
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG669890.4516625224882277No Hit
GGGGGT356190.240155359663649No Hit
GGGTGG347970.23461315730975027No Hit
GGTGGG337150.22731794691203924No Hit
TGGGGG325850.21969910426008596No Hit
AGGGGG321710.21690777606724648No Hit
GCCGTC321110.21650323574944363No Hit
GGGGTG309910.20895181648379083No Hit
GTGGGG306990.20698305360381708No Hit
CGGGGG298230.2010767649638958No Hit
GCGGGG291350.19643803598642334No Hit
GGGGGC280400.18905517518652176No Hit
GGGGCG279300.18831351793721654No Hit
GGCGGG275420.18569749054875825No Hit
GGGCGG274270.18492212160630284No Hit
GAGGGG273810.18461197402932067No Hit
GGGGGA266880.17993953335869803No Hit
GGGGAG262660.17709426645681814No Hit
GGGAGG235070.15849215417651807No Hit
GGAGGG231050.1557817340472391No Hit
GGGTGT211770.14278250516850824No Hit
GGTTGG199270.13435458188094931No Hit
GTGGGT187560.12645930334516411No Hit
GTGTGG185890.12533333279394623No Hit
GGTGGT184730.12455122151286077No Hit
GGGGTT180400.12163178888605036No Hit
TGGTGG176390.11892811109540145No Hit
GGGCGT175340.1182201655392465No Hit
TGGGGT172080.11602216314585115No Hit
AGGTGG168500.11360840591629426No Hit
AGGGGT167320.11281280995794872No Hit
GGGGAT166610.11233410391521537No Hit
AAGGGG166030.11194304827467264No Hit
CGGGGT165530.11160593134317026No Hit
CTGGGG164780.11110025594591674No Hit
ATGGGG160840.10844377452567816No Hit
GGTGTG160370.10812688461006593No Hit
TTGGGG159610.10761446687418237No Hit
CGGTGG158470.106845840270357No Hit
GTCGGG157760.10636713422762364No Hit
GGGTTG157570.10623902979365275No Hit
GTTGGG157010.10586145883037011No Hit
GCGGGT156630.10560524996242832No Hit
GCGGGC154790.10436465965449965No Hit
TGTGGG153810.10370391046875503No Hit
GGATGG153090.10321846208739163No Hit
GTGGCG153090.10321846208739163No Hit
AGTGGG152880.10307687297616064No Hit
GTGGTG152170.1025981669334273No Hit
GGCTGG149330.10068334276249391No Hit
GGGGCT148450.10009001696304977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)