FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12528847
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG270540.21593367689780232No Hit
GGTGGG227540.1816128810576105No Hit
GGGGGT211710.16897803924016314No Hit
GGGTGG202620.16172278263115514No Hit
GTGGGG193490.15443559970043533No Hit
TGGGGG178470.14244726589765203No Hit
GGGGTG178330.1423355237716607No Hit
GGGTGT177720.14184864736555566No Hit
GTGTGG160900.1284236290857411No Hit
GGGGTT158910.1268352945805787No Hit
TGGTGG157370.12560613119467418No Hit
GTGGGT157280.1255342969708226No Hit
TGGGGT153870.12281257804489112No Hit
GTTGGG153320.12237359112135379No Hit
GGGTTG151460.12088901716175479No Hit
TGTGGG146360.11681841114349947No Hit
TTGGGG144510.11534181876432845No Hit
CGGGGG142290.11356990790932317No Hit
GGTGGT141280.11276376828610007No Hit
GGTTGG138740.11073644685740036No Hit
GGTGTG138410.11047305470327796No Hit
TGGTGT138380.11044910996199411No Hit
GTGGTG135340.10802270951189683No Hit
AGGGGG134270.107168680406106No Hit
GTGGTT132870.10605125914619279No Hit
GGTTGT131190.10471035363429691No Hit
GGTTTG130740.1043511825150391No Hit
GTGTGT129140.10307412964656684No Hit
GGGTTT128190.10231587950591144No Hit
TTGTGG127140.10147781356097652No Hit
GGGGGA126580.10103084505701124No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)