FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14138429
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG404010.28575310594974873No Hit
GGGTGG273330.19332416635539917No Hit
GGGGGT252560.17863370817224458No Hit
GTGGGG217490.15382897208735144No Hit
AGGGGG215680.1525487732760125No Hit
TGGGGG208290.14732188420651263No Hit
GGGGTG204290.14449271556266965No Hit
GGTGGG204080.1443441842088679No Hit
CGGGGG195060.13796440891700204No Hit
GGGGGC194000.13721467922638364No Hit
GGGGCG182980.12942031961259629No Hit
GGCGGG176570.12488657686083793No Hit
GGGCGG176360.12473804550703618No Hit
GAGGGG175600.12420050346470601No Hit
GGGTGT171150.12105305334843071No Hit
GGGAGG166230.11757317591650387No Hit
GTGGGT157990.11174508851018738No Hit
TTGGGG155190.1097646704594973No Hit
GGGTTG154890.10955248281120909No Hit
TGTGGG153980.10890884694473482No Hit
GTGTGG153540.10859763839391207No Hit
GGAGGG152760.1080459505083627No Hit
GCGGGG152230.10767108566305351No Hit
GGGGGA151760.10733865834740197No Hit
GGGGTT149330.10561993839626736No Hit
GGGGAG149040.10541482366958875No Hit
GGTTGG148740.10520263602130052No Hit
TGGGGT144850.10245126951516324No Hit
GGTGGT143970.1018288524135178No Hit
GGGGCT143390.10141862296016056No Hit
ATGGGG142250.10061230989666532No Hit
GTTGGG141730.10024451797296574No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)