FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19381776
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG609900.31467704507574534No Hit
GTGGGG389080.2007452774193655No Hit
GGGTGG383350.19778889199833904No Hit
GGTGGG370910.19137049153803037No Hit
GGGGTG367490.18960594736003555No Hit
TGGGGG353090.1821762876632152No Hit
GGGGGT340310.1755824646822871No Hit
AGGGGG298690.15410868436411607No Hit
GGGGCG293980.15167856650494774No Hit
GGGTTG284640.14685960667381565No Hit
GGCGGG275950.1423760134262206No Hit
CGGGGG275090.14193229763877158No Hit
GGGCGG272320.14050312004431378No Hit
GAGGGG270310.13946606337829928No Hit
TGGTGG267270.1378975796645261No Hit
GCGGGG263360.13588022067740335No Hit
TGTGGG261300.134817366581886No Hit
GGGGAG260640.1344768405124484No Hit
GGGGGA258470.13335723207202477No Hit
GTTGGG250670.1293328330695804No Hit
GGGTGT249200.12857438864219667No Hit
GGTGGT246960.12741866380046907No Hit
GGTGTG234940.1212169617479843No Hit
GTGGTG234490.12098478488245866No Hit
GGTTGG233280.12036048708848972No Hit
GTGGGT232850.12013862919476523No Hit
GGAGGG232810.12011799125116296No Hit
GTGTGG232760.1200921938216601No Hit
GGGGGC229320.11831733067186412No Hit
GGGTAG219920.11346741392532862No Hit
GGGAGG218620.11279668075825455No Hit
TGGGTG215720.11130042984708935No Hit
GGGGTT215340.11110436938286769No Hit
GGGTCG206360.10647115104415612No Hit
CGGTGG205880.10622349572092878No Hit
GTGGCG205800.10618221983372421No Hit
AGGTGG202810.10463953354945388No Hit
CGTGGG202510.10448474897243679No Hit
TGTGGT201290.10385529169256728No Hit
GGGCGT196060.10115688056656935No Hit
GGGGCT194580.10039327665328504No Hit
GTTGTG194160.1001765782454611No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)