FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8771314
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG477620.5445250278350541No Hit
GGGGGT256910.292897962608567No Hit
CGGGGG226650.2583991406532704No Hit
GGCGGG210810.24034027284851506No Hit
GGGTGG210460.2399412448351524No Hit
GTGGGG209830.23922299441109965No Hit
AGGGGG202130.23044437811712135No Hit
GCGGGG195870.22330747707812076No Hit
TGGGGG187360.21360539595321748No Hit
GGGGGC183680.20940990141271876No Hit
GAGGGG181140.20651409811574414No Hit
GGGGCG180580.20587565329436386No Hit
GGTGGG179210.20431374364205862No Hit
GGGCGG179190.20429094204129508No Hit
GGGGGA175250.1997990266908698No Hit
GGGGTG173400.19768987862023865No Hit
GGGGAG172750.19694882659542232No Hit
GGAGGG164250.1872581462709008No Hit
GGGAGG154020.17559512748032963No Hit
TGGGGT126400.14410611682582564No Hit
GGGTGT120480.13735684299980597No Hit
CGGGGT116220.13250010203716342No Hit
AGGTGG116060.13231768923105477No Hit
GTGGGT115390.13155383560547484No Hit
GGGGCT114270.13027694596271436No Hit
GGCCGG114200.13019714036004185No Hit
TGCGGG113260.12912546512415357No Hit
CTGGGG113120.12896585391880852No Hit
CCGGGG111650.12728993626268537No Hit
TTGGGG111380.12698211465237705No Hit
CAGGGG110620.126115653823361No Hit
CGCGGG110240.125682423408853No Hit
AGCGGG109320.12463354977372831No Hit
GGTTGG108340.12351627133631289No Hit
GGTGGT107710.12279802091226012No Hit
GCCGGG107210.12222798089317063No Hit
GGTGGC107050.12204556808706199No Hit
TGGTGG106770.12172634567637186No Hit
CGGGGC106440.12135011926377279No Hit
AGGGGC106340.1212361112599549No Hit
GGCTGG105880.12071167444239256No Hit
GGGTGA104780.11945758640039565No Hit
GTGTGG104660.11932077679581417No Hit
GACGGG104020.1185911255713796No Hit
GGGTGC103710.11823770075954412No Hit
GGGGTT103570.11807808955419906No Hit
TGGCGG103020.11745104553320061No Hit
AGGGGT102690.11707481912060155No Hit
CGGTGG102050.11634516789616699No Hit
GGCGGT101890.11616275509005833No Hit
CGGGCG101450.11566111987325958No Hit
CGGCGG101140.1153076950614241No Hit
ATGGGG99790.11376858700988245No Hit
ACGGGG99610.11356337260301022No Hit
GTCGGG99000.11286792377972103No Hit
GCGGGT97750.11144282373199729No Hit
GGGCCG97530.11119200612359789No Hit
ATGCCG97050.11064476770527198No Hit
GCGTGG96560.11008612848656427No Hit
GCTGGG95620.10901445325067602No Hit
GTGGCG94990.10829620282662325No Hit
TGGGCG94330.1075437500014251No Hit
TAGGGG93900.10705351558500814No Hit
TCGGGG93640.10675709477508159No Hit
CGGGGA93490.10658608276935475No Hit
GGGCGT93310.10638086836248252No Hit
GGTGGA92950.10597043954873808No Hit
GGGCTG92340.1052749907254489No Hit
GGCGGA91640.10447693469872359No Hit
AAGGGG91480.10429452189261496No Hit
GCAGGG91210.10398670028230661No Hit
GGCAGG90920.10365607707123473No Hit
GGGCGC90500.10317724345519953No Hit
AGTGGG89810.10239058822885602No Hit
AGGAGG89510.10204856421740231No Hit
GGGTAG89500.10203716341702053No Hit
GGGTCG89260.10176354420785756No Hit
GGGGCA88820.1012619089910588No Hit
GGGCAG88820.1012619089910588No Hit
CGGAGG87950.10027003935784307No Hit
GTTGGG87900.10021303535593412No Hit
GAGTGG87870.10017883295478877No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)