FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4609867
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG160670.34853500111825353No Hit
GGAGGG88500.19197950830251717No Hit
GGCGGG87920.19072133751364193No Hit
CGGGGG87800.1904610263159436No Hit
GGGCGG87470.18974517052227322No Hit
GGGGGC83970.1821527605894053No Hit
GGGTGG82480.17892056321798439No Hit
TGGGGG80310.17421326905960627No Hit
GGGGGT79160.17171862008166397No Hit
GAGGGG77260.1675970261181071No Hit
GGTGGG75800.16442990654611075No Hit
AGGGGG75620.16403943974956325No Hit
GGGGTG75610.1640177471497551No Hit
GGGGGA75010.16271619116126343No Hit
GCGGGG74090.1607204719789096No Hit
GTGGGG73080.15852951939828197No Hit
GGGGCG67770.14701074890013094No Hit
GGGGAG67370.1461430449078032No Hit
GGGCGT67240.14586104111029669No Hit
TGCAAT67220.14581765591068027No Hit
GTGGAG61010.1323465514297918No Hit
GGGGTT60940.13219470323113444No Hit
GCCGGG57340.12438536730018457No Hit
GGTGGT56820.1232573521101585No Hit
GGGAGG56460.1224764185170635No Hit
GGCTGG56290.12210764432032421No Hit
TGGGTG56090.12167379232416033No Hit
CGGGGT56070.12163040712454393No Hit
GGCGGT53520.11609879417345445No Hit
GGCGGC53440.1159252533749889No Hit
GGCCGG52180.11319198579915646No Hit
CCGGGG51890.11256290040471884No Hit
CAGGGG51350.11139150001507636No Hit
GCAGGG51010.11065395162159776No Hit
GGGTGT50950.11052379602274859No Hit
GGGTTG49380.10711805785286214No Hit
TGGGGT49360.10707467265324574No Hit
GAGTGG48800.10585988706398688No Hit
TAGGGG48620.10546942026743938No Hit
GTGAGG48300.10477525707357717No Hit
GGGGCC48140.10442817547664607No Hit
GAGCGG46930.10180337089985458No Hit
CGCGGG46880.10169490790081362No Hit
GGGGTC46780.10147798190273169No Hit
TTGGGG46180.10017642591424004No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)