FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6330947
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG152900.24151205183047655No Hit
GGGGTG98850.1561377784397816No Hit
GGGTGG98220.15514266665002882No Hit
GGTGGG94740.14964585866853725No Hit
GTGGGG85720.1353983851073149No Hit
GGGGGT84810.13396100141100534No Hit
CGGGGG79940.126268629321964No Hit
GGGGGC79550.12565260773783132No Hit
TGGGGG77330.12214602333584534No Hit
CGGTGG76880.12143522920030764No Hit
GCGGGG72050.11380603881220297No Hit
GGCGGG71560.1130320629757286No Hit
AGGGGG71330.11266876819534266No Hit
GGGGTT70600.11151570215324816No Hit
GGTGGT70470.11131036162520394No Hit
GGGGCG69810.11026786355974864No Hit
TTGGGG67540.10668230203159179No Hit
GTGTGG65710.10379173921373848No Hit
GGGTTG65340.10320730848007414No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)