FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17834979
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG375250.21040114485136202No Hit
GGGGGT260310.1459547555396617No Hit
GTGGGG238720.1338493305767279No Hit
TGGGGG238080.13349048518644177No Hit
GGGTGG233170.13073746820784032No Hit
GAGGGG230550.12926844489135647No Hit
GGTGGG228020.1278498842078816No Hit
GGGGTG217460.12192893526816038No Hit
GCGGGG214820.12044869803323008No Hit
GGGAGG207260.11620983686047515No Hit
GGGCGG206230.11563232006048338No Hit
CGGGGG205420.1151781563634025No Hit
AGGGGG201680.1130811536139179No Hit
GGGGCG200720.1125428855284887No Hit
GGGGGC192430.10789471633243863No Hit
GGGGGA183050.10263538858105749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)