FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7240193
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG341110.47113384960870514No Hit
GGGGGT166600.2301043632400407No Hit
GCCGTC165100.2280325952636898No Hit
GGGTGG158750.21926211083047095No Hit
GTGGGG148270.2047873585690326No Hit
TGGGGG145000.20027090438058764No Hit
GGGGTG142510.19683176953984513No Hit
GGTGGG142270.196500286663629No Hit
CGGGGG138530.19133467850926072No Hit
GGGGGA137800.1903264180941033No Hit
GGGCGG135150.1866662946692167No Hit
GGGGCG133130.18387631379439748No Hit
GAGGGG129860.1793598596059525No Hit
AGGGGG128680.17773006879788977No Hit
GGCGGG128570.17757813914629073No Hit
GCGGGG128050.1768599262478224No Hit
GGGGAG124210.1715562002283641No Hit
GGAGGG123850.17105897591403985No Hit
GGGGGC118000.16297908080627133No Hit
GGGAGG115580.15963662847109186No Hit
GTGTGG94050.12989985211720184No Hit
GGGTGT89920.12419558428898236No Hit
GTTGGG87670.121087932324456No Hit
GGTGGT85880.1186156225393439No Hit
GGGGTT84020.11604663024866878No Hit
TGGTGG83470.11528698199067344No Hit
GTGGGT83210.11492787554143931No Hit
GGGTTG82480.11391961512628185No Hit
GTGGTG81750.1129113547111244No Hit
TGGGGT81510.11257987183490827No Hit
AGGTGG81110.11202740037454803No Hit
GGTTGG78420.1083120298036254No Hit
TTGGGG77730.10735901653450398No Hit
CGGTGG77380.10687560400668876No Hit
GGGTCG77090.1064750621979276No Hit
GGTGTG75950.10490051853590092No Hit
GGGCGT75650.10448616494063072No Hit
GGGGCT75370.10409943491837856No Hit
CGGGGT74600.1030359273571851No Hit
GTGGCG73860.10201385515551864No Hit
AGGGGT73060.10090891223479817No Hit
GCGTGG72830.10059124114509103No Hit
GGCTGG72790.100535993999055No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)