FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8081029
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG374020.46283709661232497No Hit
GGGGGT235360.29125003758803486No Hit
GTGGGG209490.2592367877902678No Hit
GGGTGG206430.2554501413124492No Hit
TGGGGG205590.2544106697303029No Hit
GGTGGG190150.23530419207751885No Hit
GGGGTG187360.23185166146539013No Hit
AGGGGG160920.19913305595116662No Hit
CGGGGG157340.1947029270653527No Hit
GGGGCG151080.18695638884602442No Hit
GGAGGG150080.18571892267680268No Hit
GGGGAG142790.176697794303176No Hit
GCGGGG139720.17289877316366517No Hit
GTGGGT139220.1722800400790543No Hit
GTGTGG138660.1715870590242901No Hit
GGCGGG137880.1706218354122971No Hit
GGGGGC135810.16806028044200808No Hit
GGGAGG135570.16776328856139483No Hit
GGGTGT134370.1662783291583287No Hit
TGGGGT134260.16614220787971434No Hit
GGGGGA132740.16426125930249724No Hit
GGGGTT132220.1636177768945019No Hit
GTTGGG131320.16250405734220233No Hit
TTGGGG130510.1615017097451327No Hit
GAGGGG127220.1574304460483931No Hit
GGTTGG127060.1572324514613176No Hit
GGGCGG125460.15525250559056278No Hit
GTGGTG124670.1542749073168776No Hit
GGTGGT123810.15321068641134689No Hit
GCAATT123050.15227021212273834No Hit
GGGTTG119830.14828557105784423No Hit
TGTGGG117720.1456745174407863No Hit
TGGTGG117650.14558789480894077No Hit
TGGGTG113030.13987080110713623No Hit
GGTGTG108220.13391858883317953No Hit
GGGGAT103440.1280035005442995No Hit
ATGGGG101230.1252687003103194No Hit
AGGGGT100290.12410548211125093No Hit
GTAGGG96720.11968772788712922No Hit
GGGGCT96550.11947735863836152No Hit
GTGGCG95250.11786865261837322No Hit
GGGGTA94800.11731179284222343No Hit
TGCGGG94490.1169281783297647No Hit
CGGGGT93300.11545559358839079No Hit
GGGTTT93080.11518335103116199No Hit
GGGTCG92750.11477498719531883No Hit
GTCGGG92290.11420575275747681No Hit
AGGTGG91800.11359939433455814No Hit
CGGTGG91040.11265892004594959No Hit
CTGGGG90810.11237430282702858No Hit
TTGGGT90510.11200306297626207No Hit
GGGCGT89930.11128533259811342No Hit
GTGTGT89590.11086459410057803No Hit
GGGTAG89580.11085221943888582No Hit
AGTGGG89210.11039435695627377No Hit
GGCTGG88980.11010973973735276No Hit
GGCGGT88890.10999836778212278No Hit
GTGGTT88690.10975087454827845No Hit
GTTGGT88420.10941675868258857No Hit
GCGGGT88410.10940438402089635No Hit
GGATGG88100.1090207695084376No Hit
GTTTGG88030.10893414687659209No Hit
TCGGGG87680.10850103371736447No Hit
TGGTGT83490.10331605046832526No Hit
GGTAGG83430.10324180249817196No Hit
TGGGTT82960.10266019339863772No Hit
CGGGTG82290.10183109106525914No Hit
TTGTGG81990.10145985121449261No Hit
GCTGGG81600.10097723940849612No Hit
TAGGGG81530.1008906167766506No Hit
GATGGG81300.10060599955772959No Hit
CGTGGG81050.10029663301542414No Hit
AGGGTG81050.10029663301542414No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)