FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4373170
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG122040.2790653004571055No Hit
TGGGGG79690.18222479345646295No Hit
GGGGGT79120.18092139111902808No Hit
GTGGGG76440.17479311346231682No Hit
GGGTGG74870.17120304035745237No Hit
GGTGGG68060.15563081243125695No Hit
AGGGGG64070.14650699606921294No Hit
GGGGGC63360.14488345982433795No Hit
GGGGTG62830.14367152431760027No Hit
GGGGTT59750.13662857835391717No Hit
GGGTGT54230.12400615571770593No Hit
CGGGGG53430.12217681910376225No Hit
TGGTGG51550.11787787806099466No Hit
GGAGGG51040.11671167596960558No Hit
TTGGGG50290.1149966728940334No Hit
GTGGGT50110.11458507215589607No Hit
GGGTTG49530.1132588031107869No Hit
GTTGGT49060.112184067850095No Hit
GTTGGG48450.11078919868196296No Hit
GCGGGG47640.10893699536034501No Hit
GGTGGT47070.10763359302291015No Hit
GGGGAG46270.10580425640896648No Hit
GGTTGG45210.10338038539549113No Hit
GTGTGG45110.1031517183187482No Hit
AGGGGT44780.10239711696549642No Hit
GGGGCG44560.10189404939666193No Hit
GGGGGA44510.10177971585829043No Hit
GAGGGG44290.10127664828945594No Hit
GTGGTG43790.10013331290574115No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)