FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3912550
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG317750.812130196419215No Hit
GGGGGT166380.42524696170016996No Hit
GGGTGG162010.41407777536389306No Hit
GTGGGG155960.39861471418895605No Hit
TGGGGG136530.3489540069775466No Hit
GGGGTG130790.33428326794545754No Hit
GGTGGG126610.3235996984064102No Hit
CGGGGG123340.31524197773830365No Hit
GGCGGG121680.31099922045724654No Hit
GGGGCG118500.302871528798354No Hit
AGGGGG112950.28868640656349437No Hit
GGAGGG109320.27940856985853213No Hit
GGGGGA108750.2779517194668439No Hit
GGGCGG106720.27276328737012945No Hit
GGGGGC106430.27202208278488454No Hit
GCGGGG106370.27186873011207524No Hit
GGGAGG101610.259702751402538No Hit
GAGGGG99310.25382423227818174No Hit
GGGGAG98600.25200955898327176No Hit
GGGTGT80940.20687275561973648No Hit
GTGTGG80440.20559481667965906No Hit
GGGTTG77740.19869394640324084No Hit
GTGGGT77030.1968792731083309No Hit
GGTTGG74750.19105187154157774No Hit
GGGGTT73930.18895605167985075No Hit
TGGGGT72980.1865279676937036No Hit
GGTGGT71500.18274526843107436No Hit
CGGGGT69340.1772245722099398No Hit
GGGGCT69170.17679007297031346No Hit
TTGGGG68710.17561436914544223No Hit
GTTGGG68280.17451534165697563No Hit
GTGGTG65060.1662854148828769No Hit
TGGTGG64320.16439406525156228No Hit
GGCGGT64130.16390844845433286No Hit
GGGTAG63190.16150592324698726No Hit
CTGGGG62990.16099474767095628No Hit
GGGTCG62790.1604835720949253No Hit
TGTGGG62710.1602791018645129No Hit
GGAGGT59670.15250923310884207No Hit
AGGGGT59250.151435764399177No Hit
TGGGTG58510.1495444147678624No Hit
GCGGGT58220.14880321018261747No Hit
AGGTGG58060.14839426972179268No Hit
GTGGCG57920.148036446818571No Hit
CGGTGG57860.14788309414576173No Hit
GTCGGG57800.14772974147295242No Hit
CCGGGG57750.14760194757894468No Hit
GGGCGT57590.1471930071181199No Hit
TCGGGG55850.14274577960665039No Hit
CGTGGG55650.14223460403061944No Hit
GGCTGG55410.14162119333938225No Hit
GGGGTA55330.14141672310896986No Hit
ATGGGG55220.14113557654215284No Hit
GGTCGG54710.1398320788232738No Hit
TGGGCG54200.13852858110439484No Hit
GTAGGG53920.13781293529795147No Hit
GGTGTG53800.13750622995233286No Hit
GGGGAT53660.1371484070491112No Hit
GGCCGG52710.13472032306296405No Hit
CGGGTG51970.13282897343164943No Hit
GGGCTG51940.13275229709524478No Hit
GGGTGC51580.13183218105838904No Hit
TAGGGG51550.13175550472198438No Hit
GGCGCG51400.13137212303996115No Hit
GGGCCG51300.13111653525194567No Hit
GAGGGT50660.12948077340864653No Hit
GTGCGG50480.12902071539021867No Hit
TGCGGG50470.1289951566114171No Hit
CAGGGG50270.12848398103538614No Hit
GGCGTG50190.12827951080497374No Hit
GGATGG49630.126848219192087No Hit
GTGGGC49170.12567251536721574No Hit
GGTAGG48770.1246501642151538No Hit
GTGGAG48740.12457348787874917No Hit
GGGTGA48210.12321887260226705No Hit
CGGGCG48080.12288660847784694No Hit
GTGGGA47860.12232431534421286No Hit
GCTGGG47780.12211984511380047No Hit
GCGTGG47770.12209428633499891No Hit
TGAGGG47730.12199205121979273No Hit
GGGAGT47700.12191537488338806No Hit
AGTGGG47090.1203562893764936No Hit
TGGGGA47050.1202540542612874No Hit
GGGTTT46800.11961508479124867No Hit
GGGGCA46690.11933393822443164No Hit
TGGAGG46350.11846493974517897No Hit
GCCGGG45960.11746814737191857No Hit
GAGTGG45670.11672694278667364No Hit
CGCGGG45590.11652247255626126No Hit
GTGAGG45490.11626688476824579No Hit
GGGGCC44500.11373656566689243No Hit
TGGCGG44500.11373656566689243No Hit
GGGGTC44160.11286756718763978No Hit
GGACGG43780.11189633359318092No Hit
GGCAGG43590.11141071679595148No Hit
GGAGTG43490.11115512900793599No Hit
GGTGGA43480.11112957022913444No Hit
GCGGTG43240.11051615953789728No Hit
AGGGTG42480.10857369234897957No Hit
GATGGG42310.10813919310935323No Hit
GTGTGT42160.10775581142733No Hit
TTTGGG41980.10729575340890213No Hit
GGGCAG41840.10693793050568043No Hit
AGGGCG41660.10647787248725257No Hit
AAGGGG41610.10635007859324483No Hit
GGTGCG41480.10601781446882468No Hit
AGGGGC41440.10591557935361849No Hit
GTGGTT41320.1056088740079999No Hit
GGGATG41120.10509769843196892No Hit
CGGGGC41110.10507213965316738No Hit
TGGGAG41100.10504658087436582No Hit
TGGGGC40770.1042031411739147No Hit
GCAGGG40680.10397311216470077No Hit
GAGGTG40620.10381975949189147No Hit
CGAGGG40380.10320634880065431No Hit
GTTTGG40230.10282296711863108No Hit
AGCGGG40120.10254182055181404No Hit
GGAAGG39740.10157058695735519No Hit
GGTTTG39520.1010082938237211No Hit
CGGGGA39290.10042044191128548No Hit
GTGTTG39250.10031820679607928No Hit
ACGGGG39160.10008817778686535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)