FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5718840
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG363320.6353036629806045No Hit
GGGGGT183100.32016982464975413No Hit
GGGTGG166660.29142273607934477No Hit
GTGGGG164460.28757580208573763No Hit
GGGGCG160560.28075623727888877No Hit
TGGGGG156370.27342957662742795No Hit
CGGGGG155250.2714711375034098No Hit
GGCGGG152520.2666974421386155No Hit
AGGGGG148530.2597205027593008No Hit
GGGCGG148250.2592308929782963No Hit
GGGGTG145950.25520909834861616No Hit
GCGGGG140040.2448748347566989No Hit
GGGGAG139640.24417539221240672No Hit
GGTGGG135920.2376705765504893No Hit
GGGGGC132620.2319001755600786No Hit
GAGGGG126260.22077903910583266No Hit
GGAGGG121970.21327751781829882No Hit
GGGAGG116850.20432465325135865No Hit
GGGGGA101030.1766617006246022No Hit
GTGTGG89080.15576585461387274No Hit
GGGTGT85250.14906869225227493No Hit
GGGGTT83640.14625343601149884No Hit
GTGGCG81580.142651306908394No Hit
TGGTGG81580.142651306908394No Hit
GTGGGT81110.14182946191885068No Hit
CGGGGT81010.14165460128277763No Hit
GGGTAG79880.13967867609515217No Hit
GGGCGT79710.13938141301382798No Hit
TGGGGT79180.1384546516426408No Hit
GTGGTG78530.137318057508166No Hit
CTGGGG78330.1369683362360199No Hit
TTGGGG77540.13558693721104279No Hit
GTTGGG76740.1341880521224584No Hit
CGGTGG76350.13350609564177351No Hit
GGGTCG76060.13299899979716165No Hit
GGCTGG76060.13299899979716165No Hit
AGGGGT75930.1327716809702667No Hit
GGCGGT75840.13261430639780095No Hit
GTCGGG75700.13236950150729868No Hit
GGGGCT75120.13135530981807497No Hit
GGCCGG74250.12983402228423946No Hit
GGGCCG73830.12909960761273265No Hit
ATGGGG73490.1285050814500843No Hit
CGGGCG73470.12847010932286967No Hit
GGGTTG73290.1281553601779382No Hit
AGGTGG72680.1270887102978926No Hit
GGGGAT72370.12654664232606613No Hit
GTGGAG72200.12624937924474194No Hit
TAGGGG72030.12595211616341775No Hit
GCCGGG71840.12561988095487897No Hit
GCGTGG71040.12422099586629456No Hit
TGTGGG70780.12376635821250463No Hit
CCGGGG70430.12315434598624896No Hit
CGGGTG70210.12276965258688824No Hit
GTGCGG70180.12271719439606633No Hit
GGTGGT70070.12252484769638598No Hit
TGGGTG70070.12252484769638598No Hit
GCAATT69690.12186037727930839No Hit
GGCGTG68440.11967461932839527No Hit
CAGGGG68180.11921998167460533No Hit
GCGGGT67130.11738394499583832No Hit
GGTTGG66960.11708668191451413No Hit
TGGGAG66450.11619489267054159No Hit
GAGGGT65800.11505829853606675No Hit
AGGGCG65800.11505829853606675No Hit
CGCGGG65740.11495338215442293No Hit
TGGGCG65740.11495338215442293No Hit
CGTGGG65480.114498744500633No Hit
AGCGGG65380.11432388386455995No Hit
TGCGGG65250.11409656503766498No Hit
GGCAGG65000.11365941344748236No Hit
GGGCAG64960.11358946919305314No Hit
GTGAGG64720.11316980366647782No Hit
CGGCGG64660.11306488728483398No Hit
GTAGGG64180.11222555623168334No Hit
AGGCGG63960.11184086283232264No Hit
GCGCGG63610.11122885060606696No Hit
GGTGTG63350.11077421295227705No Hit
GCGGCG62860.1099173958355191No Hit
GGCGAG62730.10969007700862414No Hit
AAGGGG62600.10946275818172915No Hit
GGGATG62350.10902560659154653No Hit
CGGAGG62330.10899063446433192No Hit
GGGGCC62150.10867588531940044No Hit
GGGTGC61600.10771415182099867No Hit
GGCGCG61580.10767917969378404No Hit
ACGGGG61500.10753929118492561No Hit
TGGCGG61460.10746934693049638No Hit
GGATGG61270.10713711172195761No Hit
GCTGGG60930.10654258555930923No Hit
GTGGGC60610.10598303152387548No Hit
GGGCTG60550.10587811514223165No Hit
GGGGCA59900.10474152100775681No Hit
GATGGG59850.10465409068972029No Hit
GGAGGT59810.10458414643529107No Hit
CGGGAG59780.10453168824446916No Hit
GCGGAG59610.10423442516314498No Hit
GCGAGG59410.10388470389099888No Hit
TCGGGG59300.10369235719131852No Hit
GGGAAG58950.10308034496506284No Hit
GGTCGG58910.10301040071063364No Hit
TGAGGG58500.10229347210273412No Hit
GAGTGG58470.1022410139119122No Hit
AGGGTG58050.1015065992404054No Hit
GGGACG57830.10112190584104469No Hit
GACGGG57680.10085961488693511No Hit
GGAAGG57580.10068475425086207No Hit
GGGAGT57370.10031754691510865No Hit
GCAGGG57190.10000279777017716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)