FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10632070
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG306810.2885703348454252No Hit
GGGGGT215590.20277330754970577No Hit
GTGGGG193170.18168616271337568No Hit
GGGTGG188370.1771715197510927No Hit
TGGGGG172920.16264001271624434No Hit
GGGGTG168520.15850159000081826No Hit
GGTGGG168260.1582570468403613No Hit
CGGGGG153540.14441214175602682No Hit
GGGGGC148350.13953068405305832No Hit
AGGGGG147900.1391074362753443No Hit
GGGGCG146040.13735801212745966No Hit
GGGCGG146040.13735801212745966No Hit
GCGGGG143520.1349878245722611No Hit
GAGGGG140840.13246714891831976No Hit
GTGGGT138550.13031328800506392No Hit
GGCGGG135880.12780201785729403No Hit
GGGTGT135190.12715303793146585No Hit
GGGGTT135090.12705898286975162No Hit
GGGGAG134290.12630654237603778No Hit
GGAGGG134070.12609962124026647No Hit
GGTGGT128950.12128400208049797No Hit
GTGTGG125680.11820840156244268No Hit
GGGAGG121280.11406997884701661No Hit
TGGGGT119100.11201957850164644No Hit
GGGGCT118710.11165276376096094No Hit
GGGTTG117490.11050529200804735No Hit
GGGGGA117050.11009144973650475No Hit
GTGGTG114160.10737325845296354No Hit
TGGTGG112330.10565205082359315No Hit
GGTTGG111060.10445755153982243No Hit
GGTGTG109780.10325364674988033No Hit
CGGGGT109470.10296207605856621No Hit
GGGGAT108590.10213439151548098No Hit
GTTGGG108520.10206855297228103No Hit
TTGGGG108100.10167352171308126No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)