FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1968070
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG93840.47681230850528694No Hit
GGGGGT57130.29028439029099573No Hit
GCAATT52710.26782583952806555No Hit
GGGTGG52600.2672669163190334No Hit
GTGGGG49890.2534970808965128No Hit
GGTGGG47500.24135320390026777No Hit
TGGGGG45920.23332503417053252No Hit
ATCTCG44050.22382333961698517No Hit
GGGGTG41160.20913890257968468No Hit
GAGGGG39780.20212695686637164No Hit
GGGAGG39710.20177127846062384No Hit
GGGTGT39690.20166965605898166No Hit
GGGCGG37610.19110092628819098No Hit
GGGGAG37360.18983064626766324No Hit
AGGGGG35820.18200572134121246No Hit
GGGGGA34870.1771786572632071No Hit
GGGGCG34830.17697541245992265No Hit
GTGGGT34330.17443485241886722No Hit
GCGGGG33300.169201298734293No Hit
GGCGGG33280.16909967633265077No Hit
GGTGGT32450.16488234666449872No Hit
GGGTTG32430.1647807242628565No Hit
CGGGGG32310.16417098985300319No Hit
GGAGGG31680.16096988420127334No Hit
GTGTGG31540.1602585273897778No Hit
TGGGGT31380.15944554817664006No Hit
GGGGTT31340.15924230337335563No Hit
GGGGGC30110.15299252567235921No Hit
GGTTGG29810.15146818964772596No Hit
GTGGTG29500.14989304242227156No Hit
GGGTAG29210.14841951759845942No Hit
GTTGGG29000.14735248238121612No Hit
TGGTGG27060.13749510942192095No Hit
TTGGGG26540.1348529269792233No Hit
GTGAGG24880.12641826764291922No Hit
GGGGAT24650.1252496100240337No Hit
GGTGTG23710.12047335714684944No Hit
TTGGGT23440.11910145472467949No Hit
GGGAGT23380.11879658751975286No Hit
TGTGGG23370.11874577631893174No Hit
ATGGGG23330.11854253151564731No Hit
GGAGGT23280.11828847551154176No Hit
AGGGGT23150.11762792990086735No Hit
GGGCGT22980.1167641394869085No Hit
GGATGG22490.11427439064667416No Hit
GGTGGA22370.11366465623682084No Hit
GTGGCG22100.1122927538146509No Hit
GGTAGG22060.11208950901136645No Hit
GGTTGT22020.11188626420808204No Hit
GTGGGC21360.10853272495388883No Hit
TGGAGG21310.10827866894978329No Hit
GGGGCT21280.10812623534731997No Hit
GCGTGG21180.10761812333910886No Hit
GGGCTG20780.10558567530626452No Hit
GGCGGT20770.1055348641054434No Hit
GGGTTT20740.10538243050298007No Hit
GGGTCG20660.10497594089641121No Hit
CTGGGG20630.10482350729394786No Hit
GTGCGG20570.10451864008902123No Hit
TCGGGG20490.10411215048245234No Hit
GTCGGG20420.10375647207670458No Hit
GTGTTT20400.10365484967506237No Hit
AGGGTG20330.10329917126931461No Hit
CGGGGT20310.10319754886767239No Hit
CGGTGG20230.10279105926110353No Hit
GAGGTG20060.10192726884714466No Hit
GATGGG20050.10187645764632355No Hit
GTGTGT20020.10172402404386024No Hit
TGGGAG19940.10131753443729134No Hit
GTGGGA19910.10116510083482803No Hit
GGGGTA19840.10080942242908027No Hit
TGAGGG19720.10019968801922696No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)