FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6471779
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG179870.2779297624347185No Hit
GGGTGG125870.19449057206681503No Hit
GTGGGG122110.18868073214490172No Hit
GGGGGT119550.1847250964533863No Hit
TGGGGG114530.17696834208955528No Hit
GGTGGG113640.17559314061867687No Hit
GGGGTG109840.16972149388908367No Hit
GGGTGT94270.14566319399967148No Hit
GTGTGG93680.14475154358639256No Hit
GGGTTG91470.14133671746207652No Hit
GTTGGG91270.14102768342367686No Hit
CGGGGG88130.1361758490208025No Hit
GGGGTT87950.13589771838624282No Hit
GGGGAG87240.13480064754992405No Hit
TGGGGT87200.13473884074224415No Hit
AGGGGG87050.1345070652134444No Hit
GTGGGT85740.13248289226192672No Hit
GGTGGT85400.13195753439664734No Hit
TGGGTG83000.12824912593585164No Hit
GTGGTG82370.12727566871489276No Hit
TTGGGG81930.12659579383041356No Hit
GGGGCG81730.12628675979201393No Hit
GGCGGG81660.12617859787857405No Hit
GGTTGG81370.12573049852289456No Hit
GGGAGG81230.1255141746960148No Hit
GGAGGG80000.12361361535985699No Hit
GGTGTG79640.12305735409073763No Hit
GGGGGA79590.12298009558113773No Hit
TGGTGG79380.12265560984081811No Hit
TGTGGG78350.12106408454305995No Hit
GGGCGG77330.11948801094722176No Hit
GAGGGG76570.11831368160130315No Hit
GCGGGG71290.11015518298755259No Hit
GTGTGT70960.10964527682419316No Hit
GTGTTG69110.10678671196899647No Hit
GGGTAG68900.10646222622867683No Hit
TGGTGT68890.10644677452675687No Hit
GTGGTT68720.10618409559411716No Hit
GTTTGG68550.10592141666147746No Hit
GGGTTT68370.10564328602691779No Hit
AGGTGG67840.10482434582515875No Hit
GGTTGT66750.10314011031588069No Hit
GGGGGC65870.10178036054692226No Hit
TTTGGG65110.10060603120100362No Hit
GGGGTA64850.10020428695108408No Hit
TGTGGT64720.10000341482612432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)