FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3443150
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG88540.2571482508749256No Hit
GGGGTG60140.17466564047456543No Hit
GGGGGT56110.16296124188606365No Hit
GTGGGG55050.15988266558238823No Hit
TGGGGG52670.15297039048545663No Hit
GGTGGG52240.15172153406038075No Hit
GGGTGG52050.15116971377953328No Hit
CGGGGG49060.14248580514935452No Hit
GGGCGG48620.14120790555160245No Hit
AGGGGG46180.13412137141861377No Hit
GCAATT44310.1286902981281675No Hit
GGGGCG42710.12404339049997821No Hit
GAGGGG42310.1228816635929309No Hit
GCGGGG40980.11901892162699854No Hit
GGGGAG40420.11739250395713227No Hit
GGAGGG40210.11678259733093244No Hit
GGGGGC39640.11512713648839No Hit
GGTTGG39360.11431392765345687No Hit
GTGGGT39310.11416871179007594No Hit
GGTGGT39130.11364593468190466No Hit
GGGGGA37550.1090571133990677No Hit
GGCGGG36900.1071693071751158No Hit
TGGGGT36750.10673365958497305No Hit
GGGTTG36050.10470063749764025No Hit
GTAGGG35630.10348082424524055No Hit
GGGTGT35540.10321943569115491No Hit
GGGAGG35090.10191249292072667No Hit
GGGCGT34970.10156397484861247No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)