FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10826071
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG357970.33065550743201294No Hit
GGGGGT234120.21625574042512746No Hit
GTGGGG222570.20558705000179658No Hit
TGGGGG220140.20334246838026462No Hit
GGGTGG218080.20143965433073552No Hit
GGGGTG192540.17784845490113635No Hit
GGTGGG187400.17310065673871897No Hit
AGGGGG177240.16371590395075No Hit
GGGGAG167680.1548853688471099No Hit
CGGGGG163190.1507379731760488No Hit
GGGGCG161070.1487797373580868No Hit
GTGTGG150510.13902550611389858No Hit
GGGCGG148820.13746445963637222No Hit
GGAGGG148590.13725200952404618No Hit
GGGGGC147310.13606967846414456No Hit
GGGGTT146120.1349704800568923No Hit
GGGTGT145250.13416686441461542No Hit
TGGGGT145140.13406525783915513No Hit
TGGTGG144730.13368654242153039No Hit
GGTGGT144500.13347409230920432No Hit
GTTGGG144420.1334001966179605No Hit
GAGGGG144350.1333355378881221No Hit
GGCGGG142370.1315066195298368No Hit
GCGGGG140840.1300933644347982No Hit
GTGGGT139890.12921585310127745No Hit
GGGAGG139630.12897569210473495No Hit
TTGGGG139500.1288556116064637No Hit
GGGGGA137290.12681424313585235No Hit
TGTGGG134760.12447729190026557No Hit
GGGTTG134590.12432026355637239No Hit
TGGGTG132570.12245439735246517No Hit
GGTTGG131230.1212166445241307No Hit
GTGGTG130280.12033913319060996No Hit
AGGTGG121840.11254313776438377No Hit
GGTGTG121730.11244153118892349No Hit
GGGTAG119510.11039092575690665No Hit
GTGGCG112430.10385115708182589No Hit
ATGGGG110930.10246561287100371No Hit
TGGTTG109680.10131099269531856No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)