FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6481783
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG305820.4718146226123275No Hit
GGGGGT163730.25260024903641487No Hit
GTGGGG159360.24585827695867016No Hit
GGGTGG153980.23755809165471908No Hit
CGGGGG144730.22328732695926415No Hit
GGTGGG132270.20406422121814322No Hit
GGGGCG131980.20361681346012356No Hit
AGGGGG131960.2035859577526739No Hit
TGGGGG129930.20045410344653622No Hit
GGCGGG127190.19622687152593662No Hit
GGGGTG126630.1953629117173469No Hit
GGGGGC123170.19002487432856052No Hit
GGAGGG122200.18852837251725335No Hit
GCGGGG121670.1877106962698381No Hit
GGGCGG119980.18510338899034418No Hit
GAGGGG118080.1821720967826291No Hit
GGGGAG116610.17990420228508114No Hit
GGGGGA114310.17635579592837342No Hit
GGGAGG109480.1689041425792872No Hit
GTGGGT89990.13883525566962054No Hit
GTGTGG88940.13721533102851483No Hit
GGGTGT84510.1303807918284213No Hit
GTTGGG79710.12297542204050953No Hit
CGGTGG79470.12260515355111395No Hit
CTGGGG78320.1208309503727601No Hit
GGTGGT78260.1207383832504112No Hit
GGGGCT78030.12038354261474041No Hit
GGGGTT77340.11931902070772811No Hit
GTGGTG77300.11925730929282885No Hit
GGGTAG76980.11876361797363473No Hit
CGGGGT76590.1181619316783669No Hit
GTCGGG76200.11756024538309906No Hit
GGCCGG75540.1165420070372612No Hit
GGTTGG74370.1147369481514577No Hit
TTGGGG74360.1147215202977329No Hit
GGGTCG74120.1143512518083373No Hit
TGGGGT73790.11384213263541836No Hit
AGGTGG73000.11262333219115789No Hit
AGGGGT72750.11223763584803749No Hit
GTAGGG72700.11216049657941342No Hit
TGGTGG71980.11104969111122664No Hit
GTGCGG71690.11060228335320699No Hit
ATGGGG71580.110432576962234No Hit
GGCTGG71070.10964575642226838No Hit
GGGTTG71020.1095686171536443No Hit
GGGCCG70530.10881265232112831No Hit
GGGCGT69750.10760927973059264No Hit
TGCGGG69520.10725443909492187No Hit
TGTGGG69470.10717729982629781No Hit
GGGGTA69410.1070847327039489No Hit
GTGGCG69020.10648304640868107No Hit
GGAGGT68840.10620534504163438No Hit
CAGGGG68290.10535681308676949No Hit
GGTGTG67680.10441571400955571No Hit
GTGGAG67510.10415344049623385No Hit
CGCGGG67250.10375231629938861No Hit
GGGGAT66150.10205525238965883No Hit
GAGGGT66070.10193182955986031No Hit
CCGGGG65710.10137642682576692No Hit
GCGTGG65370.10085187979912318No Hit
GGATGG65360.10083645194539836No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)