FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4314422
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG83770.19416274068693326No Hit
GGGTGG68250.15819036709899958No Hit
TGGGGG65740.15237267008187885No Hit
GTGGGG64010.148362862974461No Hit
GGGGGT62410.14465437085199362No Hit
GGGGTG59630.13821086578920652No Hit
GGTGGG58120.13471097634862791No Hit
TGGTGG54390.12606555408812584No Hit
GTGTGG46540.10787076461227019No Hit
GGGGTT46000.10661914852093746No Hit
TTTTTT45890.10636418968751782No Hit
GGGTTG45840.10624829930869072No Hit
GGTGGT45140.10462583400511123No Hit
GGGTGT44260.10258616333775417No Hit
TTTGTT44020.10202988951938405No Hit
CGGGGG43630.10112594456453262No Hit
TTGGGG43600.10105641033723636No Hit
GTTGGG43380.10054649267039709No Hit
TGTTGG43310.10038424614003914No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)