FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3061689
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG62440.20393972085342438No Hit
GCAATT51610.16856708829668854No Hit
GGTGGG47660.15566571261810067No Hit
GTGGGG45800.1495906344504618No Hit
GGGTGG44500.14534461207523036No Hit
GGGGGT41480.13548077548046195No Hit
GGGGTG41160.1344356007419434No Hit
GGTGGT40120.13103878284175827No Hit
GGGGTT38320.12515967493759164No Hit
TGGGGG38310.12512701322701295No Hit
GGTTGG36480.11914992019111019No Hit
TGTTTT34630.11310750373405005No Hit
TGGTGG34190.11167038846858711No Hit
TTGGGG34080.11131110965222138No Hit
GGGTGT32550.10631386793367975No Hit
GGTGTG32360.10569329543268437No Hit
GTGGTT32260.10536667832689735No Hit
TGGGGT32200.10517070806342513No Hit
GGGTTG32100.1048440909576381No Hit
AGGGGG31590.1031783437181242No Hit
GGTGTT31120.10164324332092516No Hit
GTTGGT30930.10102267081992977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)