FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3989943
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG289500.7255742751212235No Hit
GTGGGG137770.3452931533107115No Hit
GGGGGT136140.3412078819171101No Hit
CGGGGG128670.3224858099476609No Hit
GGTGGG120250.30138275158316796No Hit
TGGGGG116280.29143273475335363No Hit
GGGTGG114220.2862697537283114No Hit
GGGGTG111030.2782746520439014No Hit
GCGGGG110870.27787364380894664No Hit
GGGCGG107950.2705552435210227No Hit
GGGGGC103840.26025434448562296No Hit
GGGGAG103660.25980321022129893No Hit
GGGGCG102610.25717159367940845No Hit
GAGGGG98460.24677044258527No Hit
GGCGGG97060.24326162052941608No Hit
AGGGGG94210.23611866134428486No Hit
GGGAGG93860.23524145583032138No Hit
GGAGGG91860.23022885289338718No Hit
GTGGGT68260.1710801382375638No Hit
CGGGGT66490.16664398463837704No Hit
GCGGGT66140.16576677912441357No Hit
GGGGGA65490.16413768316990995No Hit
GGTGGT65010.16293465846504573No Hit
GGGTGT64800.16240833515666764No Hit
GTGTGG64450.16153112964270416No Hit
GGGGTT62500.15664384177919333No Hit
CTGGGG62480.156593715749824No Hit
TTGGGG60820.15243325531216861No Hit
GGGGCT58470.14654344686127094No Hit
GGCTGG58420.1464181317878476No Hit
CCGGGG58190.14584168245010018No Hit
GGCGGT58170.14579155642073083No Hit
CGGTGG58120.14566624134730746No Hit
GGGTTG57960.14526523311235273No Hit
GTGGCG57870.1450396659801907No Hit
GTTGGG57660.1445133426718126No Hit
TGGGGT57520.14416246046622722No Hit
GGCCGG55280.1385483451768609No Hit
TGGTGG54790.13732025745731205No Hit
GTCGGG54540.13669368209019528No Hit
GTGGTG54520.13664355606082593No Hit
GGGTCG53510.13411219157767415No Hit
GTGGAG53480.13403700253362014No Hit
GTGCGG53280.13353574223992673No Hit
GGGGCC53070.13300941893154863No Hit
GGGCGT52430.1314053859917297No Hit
GGGCCG52340.13117981885956767No Hit
GGGGAT51890.13005198319875746No Hit
GGGTAG51590.12930009275821736No Hit
GGTTGG51280.12852313930299253No Hit
TGTGGG50750.127194799524705No Hit
TGGGTG50740.1271697365100203No Hit
TCGGGG50020.125365199452724No Hit
TGCGGG49890.1250393802618233No Hit
GGGGTC49250.12343534732200435No Hit
GTAGGG48800.12230751166119416No Hit
GCTGGG48620.12185637739687008No Hit
TAGGGG48320.12110448695632994No Hit
CGGGCG48290.12102929791227594No Hit
GAGGGT48210.12082879379479858No Hit
GCCGGG48000.12030247048642048No Hit
GGAGGT47990.12027740747173582No Hit
GGTGTG47770.11972602114867306No Hit
AGGGGT47640.11940020195777233No Hit
TGGGGC47100.11804679916480011No Hit
CGTGGG46780.11724478269489064No Hit
GGCGCG46450.11641770321029647No Hit
GGGCTG46200.11579112784317971No Hit
ATGGGG46180.11574100181381036No Hit
GAGGTG46050.11541518262290966No Hit
GGGATG45900.11503923740263959No Hit
GCGCGG45780.11473848122642352No Hit
AGGTGG45660.11443772505020748No Hit
GGGAGT45600.11428734696209947No Hit
TGGGCG44590.11175598247894769No Hit
GGATGG44470.11145522630273165No Hit
CGGCGG44350.11115447012651558No Hit
ACGGGG44330.11110434409714624No Hit
GGTAGG44160.11067827284750684No Hit
GGGCAG44080.11047776873002947No Hit
GGTGCG43960.11017701255381343No Hit
GCAGGG43940.11012688652444408No Hit
GGTGAG43730.109600563216066No Hit
CAGGGG43650.10940005909858862No Hit
CGGGGC43410.10879854674615652No Hit
GTGTTG43300.10852285358462514No Hit
GGTCGG43290.10849779056994048No Hit
CGGGTG43280.10847272755525579No Hit
AGTGGG43220.10832234946714778No Hit
GCGTGG43130.10809678233498574No Hit
TGGCGG42990.10774590012940036No Hit
GTGAGG42750.10714438777696825No Hit
GGGCGC42660.10691882064480619No Hit
CGCGGG42550.10664312748327481No Hit
TGGAGG42310.10604161513084272No Hit
GATGGG41700.10451277123507778No Hit
GGCAGG41680.10446264520570846No Hit
GGGTGC41150.10313430542742089No Hit
GTGTGT41130.10308417939805155No Hit
TGGGAG41010.10278342322183551No Hit
GCGGGC40420.10130470535543992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)