FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3102804
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT381391.2291785107921738No Hit
GGGGGG139130.44840086579751737No Hit
TGGGGG74740.24087889534756302No Hit
GGGGTG70690.2278261856050205No Hit
GGGGGT67270.21680389737798456No Hit
GGGTGG66430.2140966686906424No Hit
CGGGGG62610.2017852239458245No Hit
AGGGGG57100.1840270929133777No Hit
GCGGGG57020.18376926160982132No Hit
GTGGGG56090.18077197270597822No Hit
GGGGAG55710.17954727401408532No Hit
GGGGCG54680.1762276959807967No Hit
GGGGGC54600.17596986467724032No Hit
GGGCGG52370.1687828170906058No Hit
GAGGGG51230.16510872101492713No Hit
GGCGGG50450.1625948658052523No Hit
GGTGGG49870.16072558885446842No Hit
GGGGGA47410.15279727627010922No Hit
GGAGGG46590.15015450540865619No Hit
GGGAGG44160.14232287956313064No Hit
TGGTGG42680.13755300044733731No Hit
TTGGGG38610.12443583287890567No Hit
GGGTGT36890.11889245985244315No Hit
GCGGGT35820.11544396616737634No Hit
GTGTGG35690.1150249902990972No Hit
TGGGGT34970.11270450856708963No Hit
GGGTTG34960.1126722796541451No Hit
GGTTGG34950.11264005074120055No Hit
GGGGTT34850.11231776161175504No Hit
GTGGGT33930.10935270162085649No Hit
GGGGAT33690.1085792077101873No Hit
GCGTGG33490.10793462945129632No Hit
ATGGGG33430.10774125597362902No Hit
GTTGGG33200.10699999097590437No Hit
GGGCTG33100.10667770184645889No Hit
GGTGTG32810.10574306337106695No Hit
GCAGGG32740.10551746098045509No Hit
GGGTCG32620.1051307140251205No Hit
GGAGGT32600.10506625619923139No Hit
AGGTGG32420.10448613576622952No Hit
TGTGGG32270.10400270207206128No Hit
CGGTGG32120.10351926837789303No Hit
GGGTAG31940.10293914794489113No Hit
AGGGGT31670.1020689672953883No Hit
CGGGGT31560.10171444925299825No Hit
GGCTGG31030.10000631686693713No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)