FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33208684
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG951970.2866629704447186No Hit
GGGGGT607240.1828557855529596No Hit
GTGGGG568040.17105164420246222No Hit
GGGTGG548850.165273035209706No Hit
GGGGTG536800.16164446624864748No Hit
GGTGGG526770.15862417191840544No Hit
TGGGGG517320.155778530699982No Hit
GGGGGC464360.13983089483461617No Hit
CGGGGG463270.13950266743481915No Hit
GCGGGG453120.13644623797799396No Hit
AGGGGG452790.13634686637989027No Hit
GGGGCG439180.13224854077325074No Hit
GGCGGG436600.13147163555171293No Hit
GAGGGG431680.12999009536180356No Hit
GTGGGT413760.12459391645871906No Hit
GTGTGG413330.1244644322551294No Hit
GGGCGG410650.12365741442810561No Hit
GGAGGG405340.12205843507680099No Hit
GGGGTT395150.11898996057778141No Hit
GGGGAG395060.11896285923284403No Hit
GGGTTG377340.11362690554073145No Hit
GGGTGT374840.11287409040358239No Hit
GGGAGG369690.11132329122105532No Hit
GTTGGG367140.11055541978116326No Hit
GGGGGA364480.10975442447523666No Hit
GTGGTG356480.10734541603635965No Hit
GGTGGT353790.10653538694878725No Hit
TTGGGG343960.10357531782951714No Hit
GTGGCG342400.1031055611839361No Hit
GTAGGG341590.10286164907949982No Hit
GGGGCT338940.1020636650341218No Hit
ATGGGG337290.10156680704360341No Hit
TGGGGT334600.10075677795603102No Hit
GGTTGG334070.10059718114695541No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)