FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19354262
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG914830.47267625084335435No Hit
GGGGGT582920.30118430762175274No Hit
GGGTGG568510.29373891910732636No Hit
TGGGGG545550.2818758989622027No Hit
GGTGGG524160.2708240696545288No Hit
GTGGGG506000.26144112340734044No Hit
GGGGTG489110.25271436337898084No Hit
CGGGGG412200.2129763459851892No Hit
AGGGGG400780.2070758368363516No Hit
GGGTGT371570.1919835538032915No Hit
GGTGGT363510.18781909638300856No Hit
GGGGTT361350.1867030631289377No Hit
GGGGCG356810.1843573265671406No Hit
GGCGGG356220.18405248415051942No Hit
GTGGGT346210.17888049670920028No Hit
GTGTGG342520.17697393990016255No Hit
TGGTGG340590.17597674352036774No Hit
GGGGGC335140.17316082628208712No Hit
GCGGGG334750.17295932027787986No Hit
GGGGAG334060.17260280965505168No Hit
GGAGGG329000.1699883984209783No Hit
GGGTTG323850.1673274858013186No Hit
GGGCGG323800.1673016516982151No Hit
TGGGGT321580.16615461752042004No Hit
GGGGGA318580.16460457133421053No Hit
GGGAGG316540.16355053992758803No Hit
TTGGGG313730.16209866333317177No Hit
GGTTGG313330.16189199050834385No Hit
GAGGGG310820.16059511853254854No Hit
GTTGGG309540.15993376549309912No Hit
TGGGTG300650.15534046196129825No Hit
TGTGGG297720.1538265835194336No Hit
GGTGTG286980.1482774181728035No Hit
GTGGTG286850.1482102495047344No Hit
AGGGGT267030.13796961103451014No Hit
ATGGGG251650.13002304091987593No Hit
AGTGGG249590.12895867587201207No Hit
AGGTGG245810.12700561767738805No Hit
GGGGCT242730.12541423692621295No Hit
CGGGGT242070.12507322676524685No Hit
GGGTCG242030.12505255948276406No Hit
CGGTGG241990.12503189220028127No Hit
GGGTTT241850.12495955671159148No Hit
GGGTAG240080.12404502946172787No Hit
GGCGGT237540.12273265702407046No Hit
GTAGGG235260.12155462192255122No Hit
AGGGTG234150.1209811048336537No Hit
GTGTGT232680.12022158220241103No Hit
TGCGGG232190.11996840799199682No Hit
GTGGTT231480.1196015637279272No Hit
GGTTGT229810.11873870468427057No Hit
GGGGTA227580.11758650368585483No Hit
GGGGAT226560.11705948798254359No Hit
GGGTGC225610.11656864002357725No Hit
GCGGGT225230.1163723008399907No Hit
GTCGGG225190.11635163355750791No Hit
GGCTGG224680.11608812570585228No Hit
CTGGGG219430.11337554487998559No Hit
TGGTGT218900.1131017033870886No Hit
GGTGTT218010.11264185635184643No Hit
GGTAGG216770.11200117059487982No Hit
TAGGGG216690.11195983602991424No Hit
GCGTGG216270.1117428295638449No Hit
TGTGGT215890.11154649038025836No Hit
GTTTGG214740.11095230600887804No Hit
CGGGTG214220.11068363133660174No Hit
GGATGG213490.11030645343129075No Hit
TGTTGG212230.10965543403308273No Hit
TCGGGG211590.10932475751335805No Hit
TGGTTG210900.10896824689052985No Hit
GGGCGT210560.1087925749894261No Hit
GTTGGT210310.10866340447390863No Hit
TTGGGT209210.10809505420563183No Hit
GGAGGT208370.10766104127349314No Hit
GTGTTG207020.10696352048969887No Hit
GGGAGT205990.10643133796576691No Hit
GTGGCG205380.10611616190790432No Hit
TGGGTT205340.10609549462542152No Hit
GAGGGT204720.10577515174693822No Hit
TTGGTG204630.10572865036135193No Hit
TGGGAG204480.10565114805204144No Hit
GGGGTC204430.10562531394893797No Hit
CGTGGG204180.1054961434334205No Hit
TTGTGG202100.10442144474431524No Hit
GAGTGG200170.10342424836452042No Hit
GTGGGC199660.10316074051286482No Hit
GCTGGG198570.10259755706520869No Hit
GGTCGG197990.10229788146920817No Hit
GTGCGG197880.10224104644238051No Hit
TGGGCG196590.10157452658231039No Hit
GGCGTG196420.10148669063175854No Hit
GATGGG196350.10145052288741364No Hit
TGGCGG196180.10136268693686176No Hit
GGGCTG195230.10087183897789541No Hit
TGAGGG195010.10075816892424004No Hit
GGGATG194070.1002724877858944No Hit
GGTTTG193710.10008648224354925No Hit
TTTGGG193600.10002964721672156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)