FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483563

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483563
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9240258
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG216500.23430081714168588No Hit
GGGGGT175890.19035182783857335No Hit
GGTGGG158960.1720298286043528No Hit
GTGGGG150620.16300410659529205No Hit
GGGTGG146240.15826397920923851No Hit
GGGGTT143090.15485498348639182No Hit
GGGGTG142640.15436798409741373No Hit
GTGGGT133160.14410853030294177No Hit
TGGGGG130190.14089433433568632No Hit
GTGGTT128640.13921689199587284No Hit
GGTGGT126210.1365870952953911No Hit
GGGTGT125620.13594858498539758No Hit
TGGTGG121890.13191190116120133No Hit
TGTGGG115920.12545104260075854No Hit
GTTGGG111560.12073255963199296No Hit
TTGGGG110490.11957458330708948No Hit
GTGTGG110460.11954211668115759No Hit
TGGGGT108860.11781056329812437No Hit
GTGTTT108150.11704218648440337No Hit
GGGTTT107630.11647943163491756No Hit
GGGTTG107270.11608983212373508No Hit
GGTGTT105660.11434745653205788No Hit
GTGGTG105340.11400114585545124No Hit
GGTTGT104920.11354661309240499No Hit
GGGGGA104820.11343839100596542No Hit
CGGGGG104640.11324359125037418No Hit
GGTGTG103850.11238863676750152No Hit
GTTGTT103730.11225877026377402No Hit
GGTTGG101730.11009432853498245No Hit
GTTGGT101440.1097804844843077No Hit
GCGGGG101160.10947746264227687No Hit
GTTTGG100890.10918526300889No Hit
TGGGTG100730.10901210767058668No Hit
TGTGGT98940.10707493232331823No Hit
GTGTGT98360.1064472442219687No Hit
AGGGGG97620.10564640078231581No Hit
TTGTGG97490.10550571206994436No Hit
TGGTGT97180.10517022360198168No Hit
TTTGGT95960.10384991414741883No Hit
GTTTGT95590.1034494924275924No Hit
GAGGGG93730.10143656161981625No Hit
TTTTTT92620.10023529646033694No Hit
TTTGGG92610.10022447425169297No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)