FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16401748
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG894330.5452650534564975No Hit
GGGGGT482880.2944076448437081No Hit
GGGTGG442910.27003829104068666No Hit
GTGGGG434930.2651729559556701No Hit
AGGGGG387920.23651137671423803No Hit
TGGGGG386920.23590168560082742No Hit
GGGGTG386380.2355724523995857No Hit
CGGGGG383390.233749475970488No Hit
GGTGGG378220.23059737291415525No Hit
GGGGGA352780.2150868309889897No Hit
GGAGGG352420.2148673421881619No Hit
GAGGGG343540.2094532851010758No Hit
GCGGGG332220.20255158169726786No Hit
GGGGAG326140.19884465972773144No Hit
GGGAGG324190.19765576205658078No Hit
GGGGGC316490.19296114048331922No Hit
GGCGGG307360.1873946606178805No Hit
GGGGTT242740.14799642086928783No Hit
GGGTGT239960.14630147957400638No Hit
GTGGGT236220.14402123480985074No Hit
GTGTGG232600.1418141529793044No Hit
GGTTGG232050.14147882286692856No Hit
TGGGGT221020.1347539298860097No Hit
AGGGGT219170.1336260013262001No Hit
GGTGGT218310.13310166696866702No Hit
GGGTTG217430.13256513878886567No Hit
GTTGGG216530.13201641678679615No Hit
GGGTAG215050.13111407393894847No Hit
TGGTGG213920.13042512298079448No Hit
TGTGGG212000.12925451604304614No Hit
TAGGGG211670.12905331797562064No Hit
ATGGGG210730.1284802083290147No Hit
AGGTGG210250.1281875565945776No Hit
CGGTGG205140.12507203500504946No Hit
TTGGGG204690.1247976740040147No Hit
GGGGTA204640.12476718944834417No Hit
CGGGGT204470.12466354195906436No Hit
GGGCGG204290.12455379755865045No Hit
GTGGTG196510.11981040069631603No Hit
AGTGGG193790.1181520408678392No Hit
GGGGAT193040.11769477253278125No Hit
CTGGGG192550.11739602388721006No Hit
GTAGGG192150.11715214744184584No Hit
TCGGGG189060.11526820190140709No Hit
GTCGGG183750.11203074208919683No Hit
GGGTGA183550.11190880386651471No Hit
AAGGGG182990.11156737684300479No Hit
GGCTGG182310.11115278688588556No Hit
GGGGCG182160.11106133321887399No Hit
GGATGG180880.11028092859370843No Hit
GTGAGG180340.10995169539246671No Hit
GGAGGT179560.10947613632400643No Hit
CGTGGG178320.1087201193433773No Hit
GCGGGT177630.10829943247512398No Hit
GGTAGG174930.10665326646891538No Hit
GGGAGT174350.10629964562313725No Hit
AGGGTG170990.10425108348207765No Hit
GGTGGA169460.10331825607855943No Hit
GTGGGC168940.10300121669958592No Hit
AGAGGG168930.10299511978845181No Hit
TGGGTG168150.10251956071999156No Hit
TGAGGG167820.10231836265256605No Hit
TGGGGA167730.1022634904523591No Hit
GCGTGG166470.10149527964946176No Hit
GTGGGA166330.10140992289358428No Hit
GGTGTG166150.10130017849317036No Hit
GGGGCT164520.1003063819783111No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)