FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14154129
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG663760.46895149818120213No Hit
GGGGGT366280.2587796112357037No Hit
CGGGGG314940.22250750999937896No Hit
GTGGGG313180.22126405658730394No Hit
GGGTGG303480.2144109326684814No Hit
GGGCGG301790.21321693478984116No Hit
GGGGGC298540.21092078502322537No Hit
GCGGGG290840.20548067634539716No Hit
GGTGGG289120.20426548323814203No Hit
TGGGGG277610.19613358052621957No Hit
GGCGGG265080.18728104004139004No Hit
GGGGTG257160.18168549968705244No Hit
GGGGCG254280.1796507577400206No Hit
GGAGGG251130.1774252587354545No Hit
AGGGGG244180.17251503077299918No Hit
GGGGGA234680.16580320837827606No Hit
GAGGGG230540.16287826682941778No Hit
GGGGAG218570.15442137061206662No Hit
GGGAGG208710.1474552054739645No Hit
ATCTCG197350.13942927890511664No Hit
GTGGGT192210.1357978297357612No Hit
GGGTGT190860.13484404444809003No Hit
GGGGTT181910.12852080124464035No Hit
GTGTGG180650.1276306016428139No Hit
GGTGGT173700.12272037368035857No Hit
GGCCGG171900.12144865996346367No Hit
GGCGGT169290.11960467507396604No Hit
GCAATT168790.11925142126371746No Hit
CGGGGT165800.11713896347843092No Hit
GGGTTG164150.1159732259046106No Hit
TGGGGT163690.1156482323991819No Hit
CGGTGG162470.11478629310217535No Hit
CTGGGG161930.11440477898710688No Hit
CCGGGG161080.11380424750968429No Hit
AGGGGT159840.11292817806026778No Hit
GGTTGG159420.11263144485965898No Hit
GTGGTG158910.11227112597320542No Hit
TGTGGG158610.11205917368705626No Hit
TTGGGG158280.1118260261722922No Hit
GTCGGG158090.11169178972439772No Hit
GGGCGT157270.11111245347559005No Hit
CGGCGG154440.10911303690958306No Hit
TGGTGG153540.1084771800511356No Hit
GTTGGG153530.10847011497493064No Hit
GGGGCT152580.10779893273545832No Hit
CAGGGG152500.10774241212581856No Hit
CGTGGG152330.10762230583033403No Hit
CGCGGG152140.10748806938243957No Hit
GCGGGT151300.10689460298122194No Hit
GGGCCG150560.10637178734205403No Hit
GCCGGG148990.1052625703778735No Hit
GGCTGG147390.104132158185078No Hit
GTAGGG145370.10270501279167371No Hit
GTGCGG145210.10259197157239418No Hit
GGGTAG144190.10187133379948707No Hit
ATGGGG144010.10174416242779757No Hit
GGTCGG143880.10165231643713293No Hit
GTGGCG143610.10146155937959869No Hit
GGGGTC142220.10047951378710762No Hit
GCGGGC141980.10030995195818831No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)