FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12416122
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1261221.0157922095159826No Hit
GGGGGT582020.4687615021824044No Hit
GGGTGG550800.44361677502846697No Hit
GTGGGG514170.414114809761051No Hit
GGGGTG497510.4006967715040171No Hit
TGGGGG471060.3793938236109471No Hit
AGGGGG466550.37576144950895296No Hit
GGTGGG444650.3581230918961653No Hit
GAGGGG436060.3512046676087751No Hit
GCGGGG429010.34552656618548044No Hit
CGGGGG423520.34110489571542546No Hit
GGCGGG412680.3323743113993242No Hit
GGGCGG390460.314478224360231No Hit
GGAGGG389000.31330233385271183No Hit
GGGGCG377530.30406434472857147No Hit
GGGGGA373800.3010601861031971No Hit
GGGGGC365200.2941337077712348No Hit
GGGGAG356860.28741663459814587No Hit
GGGAGG350070.2819479383337245No Hit
GGGTGT278240.2240957361726955No Hit
GTGGGT274680.22122849630504599No Hit
GTGTGG262700.21157975090773112No Hit
GGGGTT253480.20415392181230177No Hit
GTGGTG245070.19738047032720846No Hit
TTGGGG236630.19058285670839897No Hit
TGTGGG234620.18896399374941708No Hit
GGTGGT230070.1852994034691347No Hit
GGTTGG220000.17718898058508123No Hit
GGTGTG218690.1761339007461428No Hit
GGGTTG217260.1749821723723398No Hit
GTTGGG216310.1742170381379951No Hit
AGGGGT215620.1736613090625237No Hit
CGGGGT212250.17094709604174313No Hit
TGGTGG210650.16965844891021528No Hit
GCGGGT210620.16963428677649914No Hit
TGGGTG207800.1673630462071813No Hit
AGGTGG206220.1660905071647975No Hit
ATGGGG205250.16530926484130876No Hit
GGGTAG204520.16472131958754915No Hit
CTGGGG204500.16470521149840506No Hit
GGCGGT198080.15953451488314951No Hit
TGGGGT195960.1578270574338751No Hit
GGGGAT192950.15540279001768828No Hit
GGGGTA192900.15536251979482804No Hit
GAGGGT188590.15189122658427487No Hit
GTGGAG188550.15185901040598665No Hit
CGGTGG187290.15084420078990848No Hit
AGTGGG185460.14937031063322348No Hit
GTAGGG185370.14929782423207502No Hit
GGATGG184900.14891928413718875No Hit
GGGCGT183800.14803333923426334No Hit
TAGGGG181650.14630171965127275No Hit
GGGAGT180330.14523858576776227No Hit
GGCTGG178510.14377274965564932No Hit
TCGGGG178220.1435391823630599No Hit
GGGTGA178210.14353112831848786No Hit
AGGGTG176470.1421297245629513No Hit
GGGTCG176420.14208945434009104No Hit
GGGTGC175930.14169480615606064No Hit
GGGATG172210.13869870157525835No Hit
TGCGGG171390.13803826992035034No Hit
GGTGGA171160.13785302689519321No Hit
GTGGCG170570.1373778382654423No Hit
GTGCGG169500.13651605549623305No Hit
GCGTGG168610.13579924552932068No Hit
GAGTGG167870.13520324623098903No Hit
GTGGGA167860.13519519218641698No Hit
GGAGGT167130.13460724693265738No Hit
GTCGGG166310.13394681527774938No Hit
GGAAGG165090.13296422183995937No Hit
GAGGTG164530.1325131953439246No Hit
TGAGGG163540.13171584493129176No Hit
GTGGGC161930.13041914375519184No Hit
GGTGGC161540.13010503601688192No Hit
GGGGCT161020.12968622569913538No Hit
GTGAGG159630.12856671350362053No Hit
GCCGGG159130.12816401127501809No Hit
GGTAGG158880.12796266016071683No Hit
TGGGGC158160.1273827689515293No Hit
ACGGGG157270.12666595898461694No Hit
CGGGTG157220.12662568876175667No Hit
AAGGGG157060.1264968240486039No Hit
GGGCAG156840.12631963506801883No Hit
AGGGAG156650.1261666082211499No Hit
TGGGAG155900.1255625548782462No Hit
GGGCTG155010.12484574491133382No Hit
AGAGGG154910.12476520446561333No Hit
GCTGGG152910.1231543955512035No Hit
GGGGTC152610.12291277421404204No Hit
GGGGCA152060.12246980176257934No Hit
TGGGCG151810.1222684506482781No Hit
GATGGG151160.12174493775109492No Hit
GGCGTG151140.1217288296619508No Hit
AGGGGC149490.12039991230756271No Hit
TGGCGG149160.12013412883668509No Hit
TGGAGG148850.11988445345495155No Hit
CCGGGG148340.11947369718177704No Hit
GGCCGG148110.11928845415661991No Hit
GAGGGA147220.11857164418970755No Hit
GGGAAG146290.11782261804450699No Hit
GAAGGG145980.11757294266277346No Hit
AGCGGG145720.11736353750390018No Hit
GGAGTG145510.11719440256788714No Hit
GCAGGG144910.11671115989356419No Hit
GCGGTG144730.1165661870912673No Hit
GACGGG143950.11593797161464747No Hit
AGGGCG143370.11547083702946861No Hit
TGGGGA142630.11487483773113699No Hit
GCGGGC142570.11482651346370468No Hit
CAGGGG141370.11386002811505878No Hit
AGGCGG140740.1133526233070197No Hit
GTGTGT140290.11299019130127748No Hit
GGACGG138890.1118626250611906No Hit
CGCGGG137680.11088808566797265No Hit
CGTGGG136650.1100585190770516No Hit
AGGAGG136160.10966387089302118No Hit
GGTGAG136020.10955111426901251No Hit
GGGTTT135710.10930143888727897No Hit
GCGCGG135550.1091725741741262No Hit
GGGGAC135490.1091242499066939No Hit
GGTCGG135380.10903565541640135No Hit
AGGGGA134920.10866516936608708No Hit
GGGCGC134410.10825441309291257No Hit
CGAGGG134380.10823025095919644No Hit
GGGGAA133510.10752954908142816No Hit
GGCAGG133280.10734430605627103No Hit
GGTGCG133170.10725571156597849No Hit
GGGGCC132830.10698187405052881No Hit
GGGCCG132780.10694160382766857No Hit
GTGGTT131960.10628117217276055No Hit
GCGAGG131950.1062731181281885No Hit
GGCGGA131150.10562879456242458No Hit
GTGTTG130100.1047831198823594No Hit
GGCGGC129980.10468647134749481No Hit
TTGTGG129880.10460593090177432No Hit
GAGGGC128140.10320452714623776No Hit
GGGAGC127760.10289847345249992No Hit
GAGAGG126750.10208501495072293No Hit
GGCGCG126180.10162593441011615No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)