FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15852759
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1099870.6938035202578933No Hit
GGGGGT570700.3600004264241953No Hit
GGGTGG495450.31253234847006756No Hit
TGGGGG487120.3072777426314246No Hit
GTGGGG478990.30214929779731087No Hit
CGGGGG457710.28872576691539936No Hit
AGGGGG457330.28848606100679386No Hit
GGGGTG453680.28618362267413516No Hit
GGGGCG403770.25470014399386254No Hit
GGTGGG403570.2545739829893333No Hit
GCGGGG395080.2492184483470669No Hit
GGCGGG384740.24269592441290505No Hit
GGGGGA373430.23556151960677632No Hit
GGGGGC364730.23007351590975422No Hit
GGGAGG364670.23003566760839547No Hit
GAGGGG360870.22763860852233986No Hit
GGGGAG342600.2161138007585935No Hit
GGAGGG341730.2155650003888913No Hit
GGGCGG340530.21480803436171583No Hit
GGGTGT283480.17882060781974923No Hit
CGGGGT277260.17489700057888977No Hit
TGGGGT270680.17074630352987766No Hit
GTGGGT260520.1643373244997921No Hit
AGGGGT255320.1610571383820318No Hit
GGGGTT254720.16067865536844408No Hit
TTGGGG250210.15783372471630963No Hit
GGGTTG244720.15437060514198192No Hit
TGGGTG240540.15173384014732075No Hit
GTGGTG238350.15035237714772554No Hit
ATGGGG238010.1501379034400258No Hit
GGTGGT236690.1493052408101328No Hit
TGGTGG235530.14857350698386318No Hit
GTGTGG234200.14773453630374372No Hit
GGGTAG229520.14478236879775944No Hit
AGGTGG224290.1414832585293197No Hit
TGTGGG220990.13940160195458723No Hit
CTGGGG219530.13848062662152372No Hit
GGGGAT214850.13552845911553943No Hit
GCGGGT213480.1346642562345141No Hit
GAGGGT210300.13265829626249917No Hit
GGGGTA205210.12944749869722993No Hit
GGTTGG204600.12906270763341574No Hit
GGCGGT204520.12901224323160404No Hit
CGGTGG203890.12861483606733692No Hit
GGGGCT203500.1283688221085049No Hit
GTTGGG202950.12802187934604947No Hit
GGCTGG198180.12501293938802704No Hit
AGGGTG196520.12396580305043432No Hit
CGGGTG193770.12223108923815722No Hit
GGGCGT191060.12052160762678597No Hit
GTAGGG189480.11952493569100495No Hit
GGTGTG187760.11843995105205345No Hit
TAGGGG186280.11750635961853706No Hit
GGGTCG186050.11736127446332843No Hit
AGTGGG185220.11683770629453208No Hit
TGGAGG183860.11597981146373322No Hit
GGGAGT181550.11452265186142047No Hit
TGGCGG180250.11370260533198039No Hit
GGGTGA178530.11261762069302889No Hit
GGAGGT178070.11232745038261163No Hit
GCGTGG177620.11204358812242084No Hit
GTGGAG176980.11163987290792726No Hit
TCGGGG176640.11142539920022754No Hit
GGGCTG176040.11104691618663981No Hit
GGATGG175660.11080721027803425No Hit
GGCCGG174400.1100123959495No Hit
TGGGAG172950.10909772866666301No Hit
GGGATG172500.1088138664064722No Hit
TGAGGG172150.10859308464854604No Hit
GTCGGG171350.10808844063042906No Hit
GAGTGG170750.10770995761684134No Hit
TGGGGA170240.10738824705529175No Hit
GTGCGG169740.10707284454396866No Hit
GTGGCG168590.10634741876792551No Hit
TGGTGT168180.10608878870864055No Hit
ACGGGG167160.10544536758554143No Hit
TGGGGC166690.1051488892248977No Hit
CGTGGG166250.10487133501493337No Hit
GGTCGG166010.10471994180949826No Hit
GGCGTG164680.10388097112937882No Hit
GGGTGC164150.10354664446737631No Hit
TGCGGG163870.10337001906103536No Hit
GTGAGG162950.10278967844020086No Hit
TGGGCG161600.10193809165962846No Hit
CAGGGG161450.10184347090623153No Hit
AGCGGG160590.1013009785867558No Hit
GTGGTT160570.10128836248630285No Hit
TGGGTT160350.10114958538132068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)