FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10828952
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG868130.8016749912641593No Hit
GGGGGT416730.38482948303769376No Hit
GGGTGG396290.36595415696735933No Hit
GTGGGG377040.3481777368668732No Hit
TGGGGG370690.3423138268596998No Hit
AGGGGG345750.31928297401262834No Hit
GGGGTG341760.3155984069372549No Hit
GGTGGG330190.30491408586906654No Hit
CGGGGG307870.2843026730564509No Hit
GGAGGG298420.2755760668253031No Hit
GAGGGG294530.2719838447894127No Hit
GGGGGA290700.268447029777212No Hit
GGGAGG287110.26513184285977076No Hit
GGCGGG283390.2616966073910014No Hit
GGGCGG281170.25964654751447785No Hit
GGGGCG275190.25412431415339176No Hit
GGGGGC274670.25364411994807995No Hit
GGGGAG273990.2530161736795952No Hit
GCGGGG270110.24943318614765306No Hit
GGGTGT215200.19872652496751303No Hit
GTGTGG188590.1741535099610747No Hit
GGGGTT187720.17335010811757223No Hit
GGGTTG186310.1720480430608613No Hit
GGTTGG184830.1706813364765122No Hit
TGGGGT179030.16532532418649562No Hit
GGTGGT176510.16299822919152288No Hit
GTGGGT176080.1626011455217458No Hit
TGGTGG174070.1607450102281366No Hit
AGGTGG167670.15483492770122168No Hit
GGGTAG167490.15466870663015223No Hit
AGGGGT167310.15450248555908272No Hit
TTGGGG167240.15443784403144462No Hit
TGTGGG164570.15197223147724728No Hit
GTGGTG159990.14774282866892383No Hit
GGGGTA158420.14629301154904No Hit
TAGGGG157110.14508329153181213No Hit
GGATGG156940.14492630496469094No Hit
GGGGAT154050.14225753332363095No Hit
GTTGGG153050.14133408292880048No Hit
AAGGGG151550.13994890733655482No Hit
GTAGGG151320.13973651374574383No Hit
ATGGGG150050.13856373174430914No Hit
GGTGTG147350.13607041567826691No Hit
GGCTGG147270.13599653964668051No Hit
TGAGGG147150.13588572559930084No Hit
AGTGGG146850.1356086904808517No Hit
TGGGTG146620.1353962968900407No Hit
CGGGGT146160.13497150970841867No Hit
GGAGGT145180.13406652832148486No Hit
GGCGGT143940.1329214498318951No Hit
AGGGTG143300.1323304415792036No Hit
GAGGGT143300.1323304415792036No Hit
GGGGCT142410.1315085707278045No Hit
GGGTCG142050.13117612858566555No Hit
GGGTGA141270.13045583727769777No Hit
TGGGGA141080.13028038170268No Hit
GGGGAA139500.12882133007884788No Hit
GGTGGA139250.12859046748014027No Hit
GGTAGG138160.12758390654977508No Hit
GGGGCA137110.1266142836352031No Hit
GAAGGG136460.12601404087856333No Hit
GGGCGT135320.1249613074284566No Hit
GTGAGG135280.1249243694126634No Hit
TGCGGG133930.12367771137964227No Hit
TGGAGG133480.12326215870196858No Hit
GGGAGT133420.12320675167827874No Hit
GAGTGG132780.12261574342558726No Hit
GGGAAG132350.12221865975581016No Hit
TGGGAG131290.12123980233728988No Hit
CGGTGG130490.12050104202142552No Hit
GGAAGG129450.11954065361080186No Hit
GGGATG128870.1190050523818002No Hit
AGGGAG128480.11864490672781633No Hit
GTGGGA127930.11813700901065957No Hit
GTGGCG127690.11791538091590027No Hit
GGTGAG126750.11704733754475964No Hit
GCGGGT125600.11598536959070462No Hit
CGTGGG124950.11538512683406484No Hit
GTGGAG124360.11484029110111486No Hit
ACGGGG123120.1136952126115251No Hit
GATGGG122290.11292874878381581No Hit
TCGGGG122240.1128825762640743No Hit
GTGCGG122230.112873341760126No Hit
GTCGGG122060.11271635519300484No Hit
GGAGTG121620.11231003701927943No Hit
GGGCTG121530.11222692648374469No Hit
GAGGTG121440.11214381594820994No Hit
AGGAGG121030.11176520128632947No Hit
AGAGGG120930.11167285624684642No Hit
CAGGGG120010.1108232818836024No Hit
GGAGGA119970.11078634386780918No Hit
TGGCGG118740.10965049988216774No Hit
GGGCAG118450.10938269926766689No Hit
GGGTGC118300.10924418170844233No Hit
GGTCGG117700.10869011147154406No Hit
GCAGGG117670.10866240795969916No Hit
TGGGCG117460.10846848337678476No Hit
TGGGGC116170.10727723236745347No Hit
AGGGGA116090.10720335633586703No Hit
GGCGGA115780.1069170867134696No Hit
CGAGGG114170.10543033157779257No Hit
AGCGGG113970.1052456414988265No Hit
GGCAGG113770.1050609514198604No Hit
GCGTGG112780.10414673552897825No Hit
GGGAGA112660.1040359214815986No Hit
CGGGTG112530.10391587293027062No Hit
GGGTTT112320.10372194834735625No Hit
GAGAGG111880.10331563017363084No Hit
CTGGGG111320.10279849795252578No Hit
GGCCGG111010.10251222833012835No Hit
GGAGAG110660.1021890206919377No Hit
CGGGGA110450.1019950961090233No Hit
GCCGGG109810.10140408785633181No Hit
GCTGGG109270.10090542464312335No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)