FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4992407
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG402420.8060640889254421No Hit
GGGGGT192840.3862665844351232No Hit
GTGGGG189230.37903560346742565No Hit
GGTGGG162520.32553435647374107No Hit
GGGTGG161800.3240921663638401No Hit
GGGGTG160370.32122781656223137No Hit
CGGGGG156750.3139768051763408No Hit
TGGGGG156200.31287513217572205No Hit
GGGGCG152290.30504323866223243No Hit
GGCGGG146980.29440708660171333No Hit
GCGGGG139890.2802055201028282No Hit
GGGGGC139600.2796246379752292No Hit
GGGCGG139010.27844284330183816No Hit
GGGGAG137920.27625952771879375No Hit
AGGGGG136660.27373569502646716No Hit
GGGGGA133660.2677265695685468No Hit
GAGGGG131940.26428133763933914No Hit
GGAGGG121380.2431292160274593No Hit
GGGAGG119880.24012465329849908No Hit
GTGGGT99180.19866168763884837No Hit
GTGTGG92550.18538152037684427No Hit
GGGGTT91060.18239698806607715No Hit
GTGGCG86290.1728424785879837No Hit
GGGTGT84220.16869618202201864No Hit
GGTGGT83450.1671538398211524No Hit
CGGGGT82330.1649104329835288No Hit
TGGGGT82260.1647702200561773No Hit
GGCGGT78830.157899786615955No Hit
CTGGGG78170.15657777901521253No Hit
GGGGCT77960.15615714023315808No Hit
GTGGTG77770.15577656228748976No Hit
GTTGGG77370.15497534555976705No Hit
TTGGGG76660.15355318586805922No Hit
ATGGGG76100.15243148244924742No Hit
GTCGGG75330.15088914024838118No Hit
GGGGAT74770.1497674368295694No Hit
GGGTTG74110.1484454292288269No Hit
GGTTGG72280.14477986269949547No Hit
AGGGGT70270.14075374864268878No Hit
GGGTCG69870.13995253191496607No Hit
GTGCGG69460.1391312847690503No Hit
CGGTGG69050.13831003762313449No Hit
GGCTGG69040.13829000720494142No Hit
GCGGGT68420.1370481212769712No Hit
GGGCGT67380.13496495778489215No Hit
TGGTGG66660.13352276767499124No Hit
GTGGGA66110.1324210946743725No Hit
GGGCTG65770.1317400604558082No Hit
GTGGGC65400.13099893498266468No Hit
GGTGTG64910.13001744449120434No Hit
GTAGGG64770.1297370186365014No Hit
GGAGGT64680.12955674487276378No Hit
GGGTAG64420.129035953999744No Hit
GTGGAG64410.12901592358155095No Hit
TGTGGG64300.12879558898142718No Hit
GGGAGT64180.12855522396311037No Hit
GAGGGT64060.12831485894479355No Hit
GGGCAG62800.125791026252467No Hit
TAGGGG62520.1252301745430611No Hit
TGCGGG62380.12494974868835815No Hit
CCGGGG62230.12464929241546212No Hit
TGGGTG62150.12448904906991758No Hit
GGGGTA62070.12432880572437303No Hit
AGGTGG61970.12412850154244236No Hit
CGGGTG61920.124028349451477No Hit
GTGAGG61890.12396825819689782No Hit
CGTGGG61590.12336734565110577No Hit
GGTCGG61570.12332728481471962No Hit
GCCGGG61420.12302682854182362No Hit
CGGGCG61240.12266628101434839No Hit
GGGGCC61190.12256612892338305No Hit
GCGTGG61050.12228570306868008No Hit
GATGGG60920.12202530763217022No Hit
GGCGCG60470.12112393881348216No Hit
CGGGGC60400.12098372588613068No Hit
GGGGTC60100.12038281334033864No Hit
GGCCGG59910.12000223539467035No Hit
TGGGCG59900.11998220497647727No Hit
GGGCCG59600.11938129243068525No Hit
CGCGGG58830.117838950229819No Hit
GGGTGA58830.117838950229819No Hit
GGGATG58110.1163967601199181No Hit
GACGGG57980.11613636468340822No Hit
GCGGCG57910.11599615175605675No Hit
TCGGGG57550.1152750567011063No Hit
TGGCGG57380.11493453959182415No Hit
GGATGG57300.1147742962462796No Hit
AGTGGG57140.11445380955519052No Hit
GGGGCA57090.11435365746422517No Hit
CAGGGG57080.1143336270460321No Hit
GGGGAA56920.11401314035494302No Hit
TGGAGG56640.11345228864553711No Hit
GAGGCG56540.11325198446360642No Hit
TGAGGG56410.11299158902709655No Hit
GGGGAC56270.1127111631723936No Hit
TGGGAG56170.11251085899046291No Hit
TGGGGC56130.11243073731769064No Hit
GGCGTG56050.1122704939721461No Hit
GGGTGC56030.11223043313575998No Hit
CGGCGG55850.11186988560828474No Hit
GGGACG55740.11164955100816099No Hit
ACGGGG55660.11148930766261644No Hit
GAGGTG55410.11098854720778975No Hit
GCGGTG54850.10986684378897794No Hit
GGTGCG54510.10918580957041363No Hit
CGAGGG54480.10912571831583441No Hit
AAGGGG54440.10904559664306214No Hit
GGCAGG54290.10874514037016614No Hit
GGTGAG53940.10804407573340875No Hit
GGGAAG53280.10672206813266627No Hit
GCGCGG53270.1067020377144732No Hit
GGCGGA53190.10654179436892866No Hit
GAGGAG53180.10652176395073559No Hit
GGTGGC52860.10588079056855743No Hit
GAGTGG52610.1053800301137307No Hit
CGGAGG52490.10513966509541389No Hit
GCAGGG52270.1046989958951664No Hit
TGGGGA52210.104578813386008No Hit
AGGGCG52210.104578813386008No Hit
GGCGGC52170.10449869171323571No Hit
AGGGTG52150.10445863087684959No Hit
GCTGGG52070.10429838753130505No Hit
GAGCGG52060.10427835711311197No Hit
GGACGG51980.10411811376756742No Hit
GGTGGA51660.10347714038538924No Hit
AGGGGC51590.10333692745803777No Hit
AGCGGG51420.10299641034875562No Hit
GCGGGC51060.10227531529380517No Hit
CGGGAG50940.10203495027548835No Hit
CGGGGA50880.10191476776632996No Hit
GGAGTG50480.10111355103860722No Hit
GGTAGG50370.1008932164384835No Hit
GGCGAG50320.10079306434751813No Hit
GTGTGT50150.10045254723823599No Hit
GAAGGG49980.10011203012895384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)