FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2168602
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG200970.9267260659171208No Hit
GTGGGG91580.42229971198034494No Hit
GGGTGG88320.407266985827736No Hit
GGGGGT86660.39961228478070204No Hit
TGGGGG83020.3828272776655191No Hit
GGGGTG79490.3665495097763444No Hit
GCGGGG78890.3637827503617538No Hit
AGGGGG77200.35598971134399027No Hit
GGTGGG76860.3544218810090556No Hit
GCAATT76650.3534535152139489No Hit
GGCGGG71880.3314577778679536No Hit
GGGGCG70260.323987527448559No Hit
CGGGGG69140.3188229098746566No Hit
GGGGAG69030.3183156706486483No Hit
GAGGGG66380.3060958165675398No Hit
GGAGGG65040.29991672054162083No Hit
GGGCGG63920.29475210296771837No Hit
GGGGGC63770.2940604131140707No Hit
GGGAGG62990.290463625875103No Hit
GGGGGA57990.2674072974201813No Hit
GTGTGG47470.21889678235102614No Hit
GGGTTG46820.21589945965188634No Hit
GTGGGT46680.2152538824551485No Hit
GGGTGT43400.20012893098871992No Hit
TTGGGG41910.19325814510915326No Hit
GGTGGT40000.1844506276393732No Hit
GTTGGG39530.18228333276461056No Hit
TGGTGG38220.1762425747094211No Hit
ATGGGG37610.17342970263792065No Hit
GAGGGT36720.1693256761729446No Hit
GTGGCG36390.16780395849491977No Hit
GGGGTT36240.16711226864127213No Hit
GGTTGG36120.166558916758354No Hit
GTGGTG35490.16365381937303386No Hit
TGGGGT35280.16268545357792716No Hit
AGGGGT34970.16125596121372202No Hit
GTCGGG34650.15978035619260705No Hit
GGCTGG34490.15904255368204956No Hit
AGGTGG34390.15858142711295112No Hit
GTAGGG33920.15641413223818845No Hit
TAGGGG33720.15549187909999163No Hit
GGGGAT33390.1539701614219668No Hit
AGGGTG33300.1535551475097782No Hit
TGTGGG33210.1531401335975896No Hit
GGTGTG33010.15221788045939275No Hit
GCGGGT32420.14949723370171197No Hit
TGAGGG32240.1486672058773348No Hit
GGCGGT31810.14668436163021153No Hit
GGATGG31660.1459926717765639No Hit
GGGGCT31630.14585433380583435No Hit
CGGGGT31480.14516264395218673No Hit
TGGGTG31440.14497819332454734No Hit
GGGTCG30610.14115084280103032No Hit
CTGGGG30520.14073582888884176No Hit
TGCGGG30440.140366927633563No Hit
GGGTAG30250.139490787152276No Hit
TCGGGG29910.13792295681734132No Hit
GGAGGT29760.13723126696369367No Hit
GGGGTA29500.13603233788403774No Hit
GTGGAG29470.1358939999133082No Hit
GGGCGT29440.13575566194257868No Hit
TGGGAG29270.13497174677511134No Hit
GGGTGA29190.1346028455198326No Hit
CGGTGG29120.1342800569214637No Hit
GGCCGG28930.13340391644017666No Hit
GAGTGG28870.1331272404987176No Hit
GTGAGG28860.13308112784180776No Hit
GTGGGA28850.13303501518489794No Hit
GGTCGG28040.12929988997520062No Hit
TGGGGA27730.12787039761099547No Hit
GTGCGG27710.1277781722971758No Hit
GGGGAA27690.12768594698335609No Hit
GCAGGG27600.12727093307116752No Hit
GCCGGG27500.12680980650206908No Hit
GTGGGC27370.12621034196224112No Hit
GGGAGT27300.1258875533638722No Hit
GATGGG27110.1250114128825852No Hit
GCGGTG26880.12395082177365879No Hit
GCGTGG26850.12381248380292927No Hit
TGGGCG26710.12316690660619145No Hit
GGGGCA26630.1227980053509127No Hit
GGTGGA26580.1225674420663635No Hit
GGTGAG26400.12173741424198631No Hit
GCTGGG26390.12169130158507648No Hit
GGAAGG26350.12150685095743709No Hit
GGTAGG26040.12007735859323196No Hit
AAGGGG25980.1198006826517729No Hit
CCGGGG25920.11952400671031384No Hit
GGGGAC25880.11933955608267445No Hit
ACGGGG25820.11906288014121541No Hit
AGCGGG25300.11666502198190355No Hit
GAGGTG25070.11560443087297716No Hit
AGAGGG24990.11523552961769841No Hit
GGCAGG24990.11523552961769841No Hit
GGGCTG24990.11523552961769841No Hit
GGGATG24840.11454383976405075No Hit
TGGCGG24780.11426716382259171No Hit
GGGCGA24730.11403660053804247No Hit
GGCGCG24610.11348324865512437No Hit
GGAGGA24570.11329879802748498No Hit
GGTGCG24450.11274544614456687No Hit
GTGTGT24450.11274544614456687No Hit
TGGAGG24420.11260710817383734No Hit
AGTGGG24340.1122382069185586No Hit
CGCGGG24220.11168485503564046No Hit
GCGCGG24140.11131595378036173No Hit
GGTGGC23890.11016313735761564No Hit
GGCGGC23870.11007091204379596No Hit
GGGCCG23840.10993257407306642No Hit
GGGAAG23650.10905643359177941No Hit
GGAGTG23620.10891809562104987No Hit
GGGGTC23550.10859530702268098No Hit
AGGGAG23540.10854919436577112No Hit
CGTGGG23450.10813418045358253No Hit
GGGGCC23400.10790361716903332No Hit
GTGTTG23320.10753471591375457No Hit
AGGCGG23250.10721192731538567No Hit
GAGGAG23220.10707358934465615No Hit
AGGGCG23170.10684302606010694No Hit
GAGGGA22870.10545964635281163No Hit
AGGGGC22760.10495240712680336No Hit
CAGGGG22760.10495240712680336No Hit
GGCGTG22690.10462961852843444No Hit
CGGCGG22670.10453739321461476No Hit
GGGTGC22490.10370736539023757No Hit
GACGGG22480.10366125273332774No Hit
AGGAGG22460.10356902741950806No Hit
GCGGGA22380.1032001261642293No Hit
TTGTGG22300.10283122490895055No Hit
TGGGGC22010.1014939578585651No Hit
GGGCAG21960.1012633945740159No Hit
GGGCGC21850.10075615534800761No Hit
GAAGGG21810.10057170472036824No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)