FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6973910
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG229730.32941348540488763No Hit
GGGGGT127270.1824944686696559No Hit
GGGTGG123610.17724633670351353No Hit
CGGGGG120240.17241404033031685No Hit
GTGGGG119540.1714102992438962No Hit
GGGGTG114230.16379620614547652No Hit
GGGCGG113860.1632656572855113No Hit
GGTGGG113510.16276378674230094No Hit
GGGGGC112790.1617313673391254No Hit
GGCGGG109850.1575156547761586No Hit
GGGGCG107310.15387350854828927No Hit
TGGGGG102660.14720579990278052No Hit
GGAGGG100130.14357799283328865No Hit
GCGGGG99520.1427033041722649No Hit
GGGGGA96220.1379713819077103No Hit
AGGGGG94380.1353329767662617No Hit
GGGGAG94140.13498883696520317No Hit
GAGGGG92780.13303871142587156No Hit
GGGAGG91240.1308304810357461No Hit
GGGGTT76020.10900628198528516No Hit
GGGTGT74320.10656862506112066No Hit
GTGTGG73350.10517772669850917No Hit
GTGGGT73240.10501999595635733No Hit
GTCGGG71430.10242460829004102No Hit
GGCCGG70980.10177934616305631No Hit
GGGCCG70870.10162161542090448No Hit
GGGTTG70860.10160727626252705No Hit
CGGTGG70790.10150690215388498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)