FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4366651
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG121580.27842847985790486No Hit
GGGGGT77470.17741285025984443No Hit
GTGGGG76190.17448154203301341No Hit
GGGGTG73870.16916854587188215No Hit
TGGGGG72450.16591662580774144No Hit
GGGTGG70120.16058072880108806No Hit
CGGGGG68090.15593185716009822No Hit
GGTGGG65860.150824968608666No Hit
GGGGAG64760.14830587560123307No Hit
GGGCGG58800.13465697167005103No Hit
GCGGGG58620.1342447564506529No Hit
AGGGGG54630.12510731908732803No Hit
GGGGCG53840.12329815229108072No Hit
GGGGGC53320.12210730832393063No Hit
GTGGTG52520.12027524068216122No Hit
GGCGGG52450.1201149347635064No Hit
TGGTGG51910.11887828910531206No Hit
TTGGGG51690.11837447050382548No Hit
GTGTGG50290.11516835213072903No Hit
GGAGGG49750.11393170647253467No Hit
GGTGGT49460.11326758195239328No Hit
GGGAGG48340.1107026872539161No Hit
GGTTGG46850.1072904612711206No Hit
GGGTGT46420.10630572491366953No Hit
CGGGGT45350.10385533444280297No Hit
GTGGGT45010.10307670569505098No Hit
GTTGGG44800.1025957879390865No Hit
GGGGGA44560.10204616764655568No Hit
TGTGGG44070.10092402621597193No Hit
GAGGGG43930.10060341437866228No Hit
GGGTTG43730.10014539746821993No Hit
TGGGTG43720.1001224966226978No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)