FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5162763
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG103160.19981548639749686No Hit
GTGGGG79930.15482019995882051No Hit
GCAATT75530.14629763171387103No Hit
GGGGGT64570.1250686889946333No Hit
GGGTGG64490.1249137332083615No Hit
TGGGGG63410.12282183009369209No Hit
GGTGGG63300.12260876588756835No Hit
CGGGGG62590.12123353328440604No Hit
GGGCGG62150.12038127645991109No Hit
GGGGTG61810.1197227143682559No Hit
GCGGGG58480.1132726797646919No Hit
GGGGCG57660.11168438295540586No Hit
GAGGGG57550.11147131874928212No Hit
GGCGGG57070.11054158403165128No Hit
AGGGGG55650.10779111882532667No Hit
GGAGGG53450.10352983470285194No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)