FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2740459
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG157590.5750496540907929No Hit
TGGGGG82680.30170128434689225No Hit
CGGGGG81460.2972494753616091No Hit
GGGTGG73030.2664882050780545No Hit
GGGGGT68670.2505784614913049No Hit
AGGGGG68250.2490458715127648No Hit
GGGGGC64250.23444977647904966No Hit
GGCGGG62100.2266043753984278No Hit
GGAGGG61110.22299184187758325No Hit
GGGCGG61020.2226634297393247No Hit
GGGGTG60710.22153223237421177No Hit
GGTGGG58910.21496398960903995No Hit
GGGGAG58240.21251914369089264No Hit
GTGGGG55100.20106120908942626No Hit
GCGGGG54540.19901775578470612No Hit
GGGGGA51650.18847207712284694No Hit
ATCTCG50470.18416622908790098No Hit
GGGAGG49460.1804807150918879No Hit
TCTCGT49270.17978740057778642No Hit
GGGGCG48250.17606539634418905No Hit
GAGGGG46910.1711757045078945No Hit
CAGGGG41490.15139799573721044No Hit
TCGGGG37450.13665593975315815No Hit
TGGTGG36800.1342840743101794No Hit
GGGGCC36670.13380970122158367No Hit
CGGTGG36400.1328244648068079No Hit
CGGGGC35890.13096346269000922No Hit
CGCGGG35530.12964981413697488No Hit
GGCCGG35360.12902948009804197No Hit
GGGGTA35020.12778881202017617No Hit
GGGGAT34720.12669410489264754No Hit
GGGGTT34380.12545343681478177No Hit
GGCGGT34230.12490608325101744No Hit
TGCGGG34190.12476012230068027No Hit
AGGTGG34000.12406680778657882No Hit
GGGCCG33950.12388435659865737No Hit
GGGCGA33880.12362892493556737No Hit
GGGCGC33880.12362892493556737No Hit
GGGTGT33740.12311806160938733No Hit
GGGTAG33430.1219868642442744No Hit
TGGGGT33320.12158547163084724No Hit
AGGGGT33280.12143951068051008No Hit
CCGGGG33220.12122056925500437No Hit
CGGGGT33190.1211110985422515No Hit
TTGGGG32810.11972446951404857No Hit
GGGTTG32490.11855678191135136No Hit
ATGGGG32270.11775399668449701No Hit
GGCTGG32230.11760803573415987No Hit
CGGGAG31920.11647683836904694No Hit
GGGCGT31740.11582001409252976No Hit
GGAGGT31580.11523617029118113No Hit
GCCGGG31410.11461583625224825No Hit
TGTGGG31340.11436040458915823No Hit
GTAGGG31220.11392252173814679No Hit
GCGGGT30990.11308324627370818No Hit
GTGTGG30800.11238993175960668No Hit
GTCGGG30520.11136820510724663No Hit
GGGGTC30500.11129522463207805No Hit
GGGGAC30200.11020051750454943No Hit
GGTGGT30180.11012753702938086No Hit
TGGCGG29920.10917879085218937No Hit
GGGTGA29590.10797461301190786No Hit
GTGCGG29550.10782865206157072No Hit
TGGGTG29500.10764620087364926No Hit
GGGTCG29180.10647851327095206No Hit
AGGGGA28870.10534731590583914No Hit
CGGGCG28660.1045810209165691No Hit
GCGCGG28620.10443505996623192No Hit
GAGGTG28600.10436207949106335No Hit
TGGGGA28490.10396068687763618No Hit
CTGGGG28420.10370525521454618No Hit
GTGGGC28320.1033403528387033No Hit
AGTGGG28320.1033403528387033No Hit
TGCCGG28310.10330386260111901No Hit
AGGAGG28300.10326737236353471No Hit
GGTGTG28250.10308492117561327No Hit
GTGAGG28160.1027565090373547No Hit
CGGAGG27830.1015523311970732No Hit
GGGGCT27820.1015158409594889No Hit
TGGAGG27760.10129689953398317No Hit
GGGACG27600.10071305573263456No Hit
GGTTGG27510.10038464359437597No Hit
GTTGGG27490.10031166311920739No Hit
GGTCGG27490.10031166311920739No Hit
TAGGGG27460.10020219240645455No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)