FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4109079
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG298530.7265131675492246No Hit
GGGGGT153880.3744878110155585No Hit
GGGTGG143670.34964039386928314No Hit
CGGGGG138090.3360607084945313No Hit
GTGGGG132960.3235761590370981No Hit
GGGGTG124370.3026712311931701No Hit
TGGGGG118630.2887021641589271No Hit
GGTGGG116930.2845649840268342No Hit
GGGGGC115430.28091453096910524No Hit
GCGGGG109360.2661423642621619No Hit
GGGCGG108430.26387908336636995No Hit
GGGGCG106910.26017995760120455No Hit
GAGGGG104010.2531224150229285No Hit
GGCGGG103370.2515648883849641No Hit
AGGGGG96900.23581926752929308No Hit
GGGAGG95590.23263120519220973No Hit
GGAGGG92430.22494091741726063No Hit
GGGGAG86270.20994972352685357No Hit
GGTGGT78840.19186781271423597No Hit
GGGGTT77360.18826603236394335No Hit
GTGGGT74330.18089211718733078No Hit
GGGGCT73280.17833680004692049No Hit
GGGTGT72790.17714431871472902No Hit
GGCGGT72690.1769009551775471No Hit
GTGTGG70950.17266642963058146No Hit
CGGGGT67840.16509782362422334No Hit
GGGTTG66650.16220179753175834No Hit
GGGGGA64590.1571885086658105No Hit
TGGTGG61840.15049601139330734No Hit
TAGGGG61740.15025264785612544No Hit
GTGGTG58130.14146722416385765No Hit
TGGGGT57830.14073713355231185No Hit
GTTGGG57540.14003137929448425No Hit
GCGGGT57300.1394473068052476No Hit
GGGCGT56720.1380357982895924No Hit
GGGGAT56710.1380114619358742No Hit
CGTGGG56500.13750039850779214No Hit
TTGGGG56480.13745172580035575No Hit
ACGGGG56000.13628358082188247No Hit
GGGTCG55820.13584552645495498No Hit
GGGCGC55570.13523711761200016No Hit
GGTGGC55220.13438534523186338No Hit
CTGGGG54830.13343622743685385No Hit
GGTGTG54520.13268180047158987No Hit
CGGTGG54370.13231675516581695No Hit
GGCTGG54240.13200038256748045No Hit
TGGGTG54000.1314163100782438No Hit
CAGGGG53940.13127029195593465No Hit
GGAGGT53020.12903134741386088No Hit
GCCGGG52960.12888532929155172No Hit
GTGCGG52770.12842293857090603No Hit
GCGTGG52550.12788753878910578No Hit
GGTTGG51910.12633001215114142No Hit
TGGGGC51450.12521053988010453No Hit
TGGCGG51450.12521053988010453No Hit
GGGAGT51150.12448044926855872No Hit
GTAGGG51070.12428575843881319No Hit
AGGGGT51070.12428575843881319No Hit
TGGGCG50960.12401805854791305No Hit
ATGGGG50720.1234339860586764No Hit
GGGTGC50070.12185212306699385No Hit
GGGCCG49830.1212680505777572No Hit
TCGGGG49820.12124371422403901No Hit
GGCCGG49690.1209273416257025No Hit
CGGGTG49400.12022158736787489No Hit
GGTAGG49030.11932114228030175No Hit
CCGGGG48970.11917512415799258No Hit
GATGGG48330.1176175975200282No Hit
GGGGCC48220.11734989762912809No Hit
AGGGGC47820.11637644348040034No Hit
AGGTGG47810.11635210712668217No Hit
GTGGAG47660.11598706182090926No Hit
GTGGGC47530.11567068922257275No Hit
GCTGGG47230.11494059861102694No Hit
GTGGCG47210.11489192590359056No Hit
GGGTTT47200.11486758954987236No Hit
GCGGGC47200.11486758954987236No Hit
GCAGGG47180.11481891684243598No Hit
CGGGGC47170.11479458048871778No Hit
GAGGGT47080.11457555330525405No Hit
GGCGGC46470.11309103572844427No Hit
GCGGTG46200.11243395417805305No Hit
GGGGTC46060.11209324522599834No Hit
CGGGCG45960.1118498816888164No Hit
GAGTGG45890.11167952721278904No Hit
GTGAGG45780.11141182732188892No Hit
GGAGTG45700.11121713649214338No Hit
GAGCGG45360.1103897004657248No Hit
CGGCGG45090.10973261891533358No Hit
GGTCGG44870.10919721913353334No Hit
AGGGTG44750.10890518288891501No Hit
GTCGGG44120.10737199260466883No Hit
GGGTAG44110.10734765625095065No Hit
GGTTGT43530.10593614773529543No Hit
CGAGGG43370.10554676607580434No Hit
GGGCTG43300.10537641159977698No Hit
GGGCAG43270.10530340253862239No Hit
GAGGCG43240.1052303934774678No Hit
GTTGGT43160.10503570264772227No Hit
CGGGAG43090.10486534817169492No Hit
CGGAGG42930.10447596651220384No Hit
AGGCGG42860.10430561203617647No Hit
TGTGGG42770.10408658485271274No Hit
GAGGTG42400.10318613976513957No Hit
CGCGGG42350.10306445799654863No Hit
TGCGGG42260.10284543081308488No Hit
AGGAGG42110.10248038550731199No Hit
GCGCGG42030.10228569467756643No Hit
GTGTGT41960.10211534020153908No Hit
GGGGCA41790.10170162218832979No Hit
GGTGAG41420.10080117710075664No Hit
TGGAGG41410.10077684074703845No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)